| Chain sequence(s) |
A: SRPGLPVEYLQVPSPSMGRDIKVQFQSGGNNSPAVYLLDGLRAQDDYNGWDVNTPAFEWYYQSGLSIVMPVGGQSSFYSDWKSPACGKAGCQTYKWETFLTSELPQWLSANRAVKPTGSAAIGLSMAGSSAMILAAYHPQQFIYAGSLSALLDPSQGMGPSAIGAAMGDAGGYKAADMWGPSSDPAWERNDPTQQIPKLVANNTRLWVYCGNGTPNELGGANAGASAAENAVRSSNLKFQDAYNAAGGHNAVFNFPPNGTHSWEYWGAQLNAMKGDLQSSLGAG
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | VR53A |
| Energy difference between WT (input) and mutated protein (by FoldX) | -0.846279 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] FoldX: Building mutant model (00:01:08)
[INFO] FoldX: Starting FoldX energy minimalization (00:01:22)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:27)
[INFO] Main: Simulation completed successfully. (00:02:28)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 2 | S | A | -1.1363 | |
| 3 | R | A | -1.8607 | |
| 4 | P | A | -1.2274 | |
| 5 | G | A | -0.9277 | |
| 6 | L | A | -0.4436 | |
| 7 | P | A | -0.0671 | |
| 8 | V | A | 0.1959 | |
| 9 | E | A | -0.3387 | |
| 10 | Y | A | -0.0606 | |
| 11 | L | A | 0.0000 | |
| 12 | Q | A | -1.5225 | |
| 13 | V | A | 0.0000 | |
| 14 | P | A | -1.3684 | |
| 15 | S | A | 0.0000 | |
| 16 | P | A | -0.9631 | |
| 17 | S | A | -0.7218 | |
| 18 | M | A | 0.0000 | |
| 19 | G | A | -1.3702 | |
| 20 | R | A | -1.9406 | |
| 21 | D | A | -2.2883 | |
| 22 | I | A | 0.0000 | |
| 23 | K | A | -1.5096 | |
| 24 | V | A | 0.0000 | |
| 25 | Q | A | 0.0000 | |
| 26 | F | A | 0.0000 | |
| 27 | Q | A | 0.0000 | |
| 28 | S | A | -0.7936 | |
| 29 | G | A | -1.0831 | |
| 30 | G | A | -1.5451 | |
| 31 | N | A | -2.2953 | |
| 32 | N | A | -2.3694 | |
| 33 | S | A | 0.0000 | |
| 34 | P | A | 0.0000 | |
| 35 | A | A | 0.0000 | |
| 36 | V | A | 0.0000 | |
| 37 | Y | A | 0.0000 | |
| 38 | L | A | 0.0000 | |
| 39 | L | A | 0.0000 | |
| 40 | D | A | 0.0000 | |
| 41 | G | A | 0.0000 | |
| 42 | L | A | -1.2020 | |
| 43 | R | A | -2.6711 | |
| 44 | A | A | 0.0000 | |
| 45 | Q | A | -2.9498 | |
| 46 | D | A | -3.3486 | |
| 47 | D | A | -2.5899 | |
| 48 | Y | A | -1.2216 | |
| 49 | N | A | 0.0000 | |
| 50 | G | A | -1.3419 | |
| 51 | W | A | 0.0000 | |
| 52 | D | A | -1.1520 | |
| 53 | R | A | -1.9646 | mutated: VR53A |
| 54 | N | A | -1.6622 | |
| 55 | T | A | 0.0000 | |
| 56 | P | A | -0.9792 | |
| 57 | A | A | 0.0000 | |
| 58 | F | A | 0.0000 | |
| 59 | E | A | -0.6359 | |
| 60 | W | A | -0.2374 | |
| 61 | Y | A | 0.0000 | |
| 62 | Y | A | 0.0311 | |
| 63 | Q | A | -1.0458 | |
| 64 | S | A | 0.0000 | |
| 65 | G | A | -1.0079 | |
| 66 | L | A | 0.0000 | |
| 67 | S | A | 0.0000 | |
| 68 | I | A | 0.0000 | |
| 69 | V | A | 0.0000 | |
| 70 | M | A | 0.0000 | |
| 71 | P | A | 0.0000 | |
| 72 | V | A | 0.0000 | |
| 73 | G | A | -1.8785 | |
| 74 | G | A | -1.2309 | |
| 75 | Q | A | -1.6774 | |
| 76 | S | A | 0.0000 | |
| 77 | S | A | 0.0000 | |
| 78 | F | A | 0.0000 | |
| 79 | Y | A | 0.0000 | |
| 80 | S | A | 0.0000 | |
| 81 | D | A | -1.2126 | |
| 82 | W | A | 0.0000 | |
| 83 | K | A | -2.0156 | |
| 84 | S | A | -1.3927 | |
| 85 | P | A | -0.8944 | |
| 86 | A | A | 0.0000 | |
| 87 | C | A | -0.4255 | |
| 88 | G | A | -1.2194 | |
| 89 | K | A | -1.9005 | |
| 90 | A | A | -0.8620 | |
| 91 | G | A | -0.5775 | |
| 92 | C | A | 0.0652 | |
| 93 | Q | A | -0.5773 | |
| 94 | T | A | -0.8028 | |
| 95 | Y | A | 0.0000 | |
| 96 | K | A | -1.0839 | |
| 97 | W | A | 0.0000 | |
| 98 | E | A | 0.0000 | |
| 99 | T | A | -0.4535 | |
| 100 | F | A | 0.0000 | |
| 101 | L | A | 0.0000 | |
| 102 | T | A | -0.4140 | |
| 103 | S | A | -0.6579 | |
| 104 | E | A | -0.8243 | |
| 105 | L | A | 0.0000 | |
| 106 | P | A | 0.0000 | |
| 107 | Q | A | -1.4509 | |
| 108 | W | A | -0.6171 | |
| 109 | L | A | 0.0000 | |
| 110 | S | A | -1.2989 | |
| 111 | A | A | -0.7525 | |
| 112 | N | A | -1.0568 | |
| 113 | R | A | -1.5295 | |
| 114 | A | A | -1.6626 | |
| 115 | V | A | 0.0000 | |
| 116 | K | A | -1.8404 | |
| 117 | P | A | -1.1846 | |
| 118 | T | A | -0.8984 | |
| 119 | G | A | -0.5601 | |
| 120 | S | A | 0.0000 | |
| 121 | A | A | 0.0000 | |
| 122 | A | A | 0.0000 | |
| 123 | I | A | 0.0000 | |
| 124 | G | A | 0.0000 | |
| 125 | L | A | 0.0000 | |
| 126 | S | A | -0.1398 | |
| 127 | M | A | 0.0000 | |
| 128 | A | A | 0.0000 | |
| 129 | G | A | 0.0000 | |
| 130 | S | A | 0.0000 | |
| 131 | S | A | 0.0000 | |
| 132 | A | A | 0.0000 | |
| 133 | M | A | 0.0000 | |
| 134 | I | A | 0.0000 | |
| 135 | L | A | 0.0000 | |
| 136 | A | A | 0.0000 | |
| 137 | A | A | 0.0000 | |
| 138 | Y | A | -0.3204 | |
| 139 | H | A | -0.5821 | |
| 140 | P | A | -1.0066 | |
| 141 | Q | A | -1.3991 | |
| 142 | Q | A | -0.9521 | |
| 143 | F | A | 0.0000 | |
| 144 | I | A | -0.4310 | |
| 145 | Y | A | 0.0000 | |
| 146 | A | A | 0.0000 | |
| 147 | G | A | 0.0000 | |
| 148 | S | A | 0.0000 | |
| 149 | L | A | 0.0000 | |
| 150 | S | A | 0.0000 | |
| 151 | A | A | 0.0000 | |
| 152 | L | A | 0.2746 | |
| 153 | L | A | 0.0000 | |
| 154 | D | A | -1.0288 | |
| 155 | P | A | 0.0000 | |
| 156 | S | A | -1.4287 | |
| 157 | Q | A | -1.5909 | |
| 158 | G | A | -0.6390 | |
| 159 | M | A | 0.3856 | |
| 160 | G | A | 0.0000 | |
| 161 | P | A | -0.3385 | |
| 162 | S | A | -0.1564 | |
| 163 | A | A | 0.1465 | |
| 164 | I | A | 0.0000 | |
| 165 | G | A | -0.7919 | |
| 166 | A | A | -0.8185 | |
| 167 | A | A | -1.0871 | |
| 168 | M | A | 0.0000 | |
| 169 | G | A | -1.7729 | |
| 170 | D | A | -2.4691 | |
| 171 | A | A | 0.0000 | |
| 172 | G | A | -1.7955 | |
| 173 | G | A | -1.7936 | |
| 174 | Y | A | 0.0000 | |
| 175 | K | A | -1.9688 | |
| 176 | A | A | -1.0136 | |
| 177 | A | A | -1.0379 | |
| 178 | D | A | -1.2072 | |
| 179 | M | A | 0.0000 | |
| 180 | W | A | 0.0000 | |
| 181 | G | A | 0.0000 | |
| 182 | P | A | -0.7471 | |
| 183 | S | A | -0.8622 | |
| 184 | S | A | -0.7481 | |
| 185 | D | A | -0.9815 | |
| 186 | P | A | -1.1816 | |
| 187 | A | A | -1.3207 | |
| 188 | W | A | 0.0000 | |
| 189 | E | A | -2.3853 | |
| 190 | R | A | -2.0015 | |
| 191 | N | A | 0.0000 | |
| 192 | D | A | 0.0000 | |
| 193 | P | A | 0.0000 | |
| 194 | T | A | -1.3108 | |
| 195 | Q | A | -1.8431 | |
| 196 | Q | A | 0.0000 | |
| 197 | I | A | 0.0000 | |
| 198 | P | A | -1.0444 | |
| 199 | K | A | -1.4153 | |
| 200 | L | A | 0.0000 | |
| 201 | V | A | -1.3014 | |
| 202 | A | A | -0.9176 | |
| 203 | N | A | -1.5097 | |
| 204 | N | A | -1.7176 | |
| 205 | T | A | 0.0000 | |
| 206 | R | A | -1.4013 | |
| 207 | L | A | 0.0000 | |
| 208 | W | A | 0.0000 | |
| 209 | V | A | 0.0000 | |
| 210 | Y | A | 0.7202 | |
| 211 | C | A | 0.0000 | |
| 212 | G | A | 0.0000 | |
| 213 | N | A | -0.8135 | |
| 214 | G | A | 0.0000 | |
| 215 | T | A | -1.0456 | |
| 216 | P | A | -1.6233 | |
| 217 | N | A | -2.1658 | |
| 218 | E | A | -2.2599 | |
| 219 | L | A | -1.3610 | |
| 220 | G | A | -1.4357 | |
| 221 | G | A | -1.3228 | |
| 222 | A | A | -1.1664 | |
| 223 | N | A | -1.4399 | |
| 224 | A | A | -0.8132 | |
| 225 | G | A | -0.9698 | |
| 226 | A | A | 0.0000 | |
| 227 | S | A | -0.9852 | |
| 228 | A | A | -0.7439 | |
| 229 | A | A | -0.4826 | |
| 230 | E | A | 0.0000 | |
| 231 | N | A | -1.4550 | |
| 232 | A | A | -0.5117 | |
| 233 | V | A | -0.0481 | |
| 234 | R | A | 0.0000 | |
| 235 | S | A | -0.4733 | |
| 236 | S | A | -0.5728 | |
| 237 | N | A | 0.0000 | |
| 238 | L | A | 0.0366 | |
| 239 | K | A | -1.9647 | |
| 240 | F | A | 0.0000 | |
| 241 | Q | A | 0.0000 | |
| 242 | D | A | -2.5029 | |
| 243 | A | A | -1.7271 | |
| 244 | Y | A | 0.0000 | |
| 245 | N | A | -2.3423 | |
| 246 | A | A | -1.2556 | |
| 247 | A | A | -0.9075 | |
| 248 | G | A | -1.1294 | |
| 249 | G | A | -1.7452 | |
| 250 | H | A | -1.7304 | |
| 251 | N | A | -1.4040 | |
| 252 | A | A | -0.5942 | |
| 253 | V | A | 0.4705 | |
| 254 | F | A | 1.0471 | |
| 255 | N | A | 0.7499 | |
| 256 | F | A | 1.3698 | |
| 257 | P | A | 0.2620 | |
| 258 | P | A | -0.4239 | |
| 259 | N | A | -0.7608 | |
| 260 | G | A | 0.0000 | |
| 261 | T | A | 0.0000 | |
| 262 | H | A | -0.8593 | |
| 263 | S | A | -0.8251 | |
| 264 | W | A | -0.9943 | |
| 265 | E | A | -1.7214 | |
| 266 | Y | A | 0.0000 | |
| 267 | W | A | 0.0000 | |
| 268 | G | A | 0.0000 | |
| 269 | A | A | -0.5239 | |
| 270 | Q | A | 0.0000 | |
| 271 | L | A | 0.0000 | |
| 272 | N | A | -0.7042 | |
| 273 | A | A | -0.6452 | |
| 274 | M | A | 0.0000 | |
| 275 | K | A | -1.2643 | |
| 276 | G | A | -1.4875 | |
| 277 | D | A | -1.8029 | |
| 278 | L | A | 0.0000 | |
| 279 | Q | A | -1.2828 | |
| 280 | S | A | -1.1331 | |
| 281 | S | A | -0.8404 | |
| 282 | L | A | -0.5442 | |
| 283 | G | A | -0.8153 | |
| 284 | A | A | -0.9685 | |
| 285 | G | A | -0.8991 |
ALA alanine
ARG arginine
ASN asparagine
ASP aspartic acid
CYS cysteine
GLN glutamine
GLU glutamic acid
GLY glycine
HIS histidine
ILE isoleucine
LEU leucine
LYS lysine
MET methionine
PHE phenylalanine
PRO proline
SER serine
THR threonine
TRP tryptophan
TYR tyrosine
VAL valine