Project name: query_structure

Status: done

Started: 2026-03-17 00:17:17
Settings
Chain sequence(s) A: NMAAVNMNAINFAAVNMNAIHAVNMNAI
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:14)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:15)
Show buried residues

Minimal score value
-0.4546
Maximal score value
2.1513
Average score
0.8705
Total score value
24.3731

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 N A -0.4546
2 M A 0.8636
3 A A 0.4579
4 A A 0.5730
5 V A 1.5045
6 N A 0.5915
7 M A 1.3468
8 N A 0.4253
9 A A 1.1900
10 I A 2.1513
11 N A 0.8415
12 F A 2.0669
13 A A 1.3702
14 A A 1.1697
15 V A 1.6759
16 N A 0.3278
17 M A 0.7865
18 N A -0.1962
19 A A 0.5260
20 I A 1.1720
21 H A -0.1694
22 A A 0.2501
23 V A 1.5878
24 N A 0.3951
25 M A 1.0809
26 N A 0.1559
27 A A 0.7247
28 I A 1.9584
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Laboratory of Theory of Biopolymers 2018