Project name: query_structure

Status: done

Started: 2026-03-17 00:02:34
Settings
Chain sequence(s) A: KGEELFTGVVPILVELDDGDVNGHKFSVSGEGEEGDATYGKLTLKFICTTGKLPVPWPTLVTTLTTTVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGITL
C: QVQLVESGGGLVQAGGSLRLSCAASGRTFSTSAMGWFRQAPGREREFVAAITWTVGNTIYGDSMKGRFTISRDRTKNTVDLQQMDSLKPEDTAVYYCTARSRGFVLSDLRSVDSFDYKGQGTQVTVS
input PDB
Selected Chain(s) A,C
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:06:54)
[INFO]       Main:     Simulation completed successfully.                                          (00:06:57)
Show buried residues

Minimal score value
-3.9226
Maximal score value
1.3676
Average score
-0.8191
Total score value
-288.3279

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
3 K A -2.4298
4 G A 0.0000
5 E A -2.2673
6 E A -2.5823
7 L A -1.1504
8 F A 0.0000
9 T A -0.5137
10 G A 0.3586
11 V A 1.1195
12 V A 0.0000
13 P A -1.2343
14 I A 0.0000
15 L A -0.8178
16 V A 0.0000
17 E A -1.1251
18 L A 0.0000
19 D A -2.9158
20 G A 0.0000
21 D A -2.7619
22 V A 0.0000
23 N A -2.1118
24 G A -1.8035
25 H A -2.4554
26 K A -3.0908
27 F A 0.0000
28 S A -1.6079
29 V A 0.0000
30 S A -0.8406
31 G A 0.0000
32 E A -2.4538
33 G A -2.0255
34 E A -2.0215
35 G A 0.0000
36 D A 0.0975
37 A A 0.0000
38 T A 0.3204
39 Y A 1.2250
40 G A 0.0000
41 K A 0.0494
42 L A 0.0000
43 T A -0.8899
44 L A 0.0000
45 K A -1.4982
46 F A 0.0000
47 I A -1.0139
48 C A 0.0000
49 T A -0.7164
50 T A -1.1162
51 G A -1.6248
52 K A -2.2397
53 L A 0.0000
54 P A -1.1810
55 V A 0.0000
56 P A 0.0000
57 W A 0.0000
58 P A 0.0000
59 T A 0.0000
60 L A 0.0000
61 V A 0.0000
62 T A -0.0018
63 T A 0.0000
64 L A 0.0000
68 V A 0.1451
69 Q A -0.1398
70 C A 0.0000
71 F A 0.0000
72 S A 0.0000
73 R A -0.8182
74 Y A 0.0000
75 P A -1.6120
76 D A -2.6028
77 H A -1.4889
78 M A 0.0000
79 K A -3.0412
80 Q A -2.3968
81 H A -1.5731
82 D A 0.0000
83 F A 0.0000
84 F A 0.0000
85 K A 0.0000
86 S A -1.0095
87 A A 0.0000
88 M A 0.0000
89 P A 0.0000
90 E A -0.8057
91 G A 0.0000
92 Y A 0.0000
93 V A -0.4392
94 Q A 0.0000
95 E A -2.0988
96 R A 0.0000
97 T A -0.4084
98 I A 0.0000
99 F A 0.3694
100 F A 0.0000
101 K A -1.9510
102 D A -2.6490
103 D A -2.3796
104 G A 0.0000
105 N A -0.6650
106 Y A 0.0000
107 K A -1.5998
108 T A 0.0000
109 R A -3.0460
110 A A 0.0000
111 E A 0.0000
112 V A 0.0000
113 K A 0.0000
114 F A 0.0000
115 E A 0.0000
116 G A 0.0000
117 D A -1.5687
118 T A -0.7983
119 L A 0.0000
120 V A 0.0000
121 N A 0.0000
122 R A -0.9608
123 I A 0.0000
124 E A -3.0421
125 L A 0.0000
126 K A -2.7031
127 G A 0.0000
128 I A -1.0067
129 D A -2.2208
130 F A 0.0000
131 K A -3.9226
132 E A -3.9154
133 D A -3.4762
134 G A -2.7519
135 N A -1.9144
136 I A 0.0000
137 L A -1.7164
138 G A -2.0080
139 H A -1.6242
140 K A -2.1513
141 L A -1.3674
142 E A -1.5809
143 Y A -0.5531
144 N A -0.4122
145 Y A -0.5840
146 N A -0.8614
147 S A -0.8757
148 H A 0.0000
149 N A -1.4074
150 V A 0.0000
151 Y A -0.0151
152 I A 0.0000
153 M A -0.9579
154 A A -1.6847
155 D A 0.0000
156 K A -3.1485
157 Q A -3.1068
158 K A -3.3843
159 N A -2.7622
160 G A 0.0000
161 I A 0.0000
162 K A -1.2139
163 V A 0.0000
164 N A -0.7360
165 F A 0.0000
166 K A -1.5894
167 I A 0.0000
168 R A -1.0144
169 H A 0.0000
170 N A -1.1161
171 I A 0.0000
172 E A -3.1690
173 D A -2.9906
174 G A -1.8714
175 S A -0.8338
176 V A 0.1461
177 Q A 0.0000
178 L A -0.6466
179 A A 0.0000
180 D A -0.7395
181 H A 0.0000
182 Y A 0.3125
183 Q A 0.0000
184 Q A -1.3868
185 N A 0.0000
186 T A -0.8136
187 P A -0.7734
188 I A -0.4050
189 G A -1.1921
190 D A -2.1687
191 G A -1.3777
192 P A -0.9023
193 V A -0.4152
194 L A -0.1276
195 L A -0.5899
196 P A 0.0000
197 D A -2.2643
198 N A -1.6602
199 H A 0.0000
200 Y A -0.0268
201 L A 0.0000
202 S A -0.4970
203 T A -0.5691
204 Q A -0.8889
205 S A -0.2439
206 A A 0.1318
207 L A -0.0576
208 S A -0.7036
209 K A -1.7676
210 D A -2.0073
211 P A -1.7566
212 N A -2.3715
213 E A -2.5548
214 K A -2.9373
215 R A -2.9240
216 D A -2.1157
217 H A 0.0000
218 M A 0.0000
219 V A -0.3923
220 L A 0.0000
221 L A 0.2404
222 E A 0.2634
223 F A 0.9843
224 V A 0.0000
225 T A -0.1045
226 A A 0.0000
227 A A -0.0883
228 G A -0.1898
229 I A 0.2692
230 T A 0.7359
231 L A 1.2422
3 Q C -2.1115
4 V C -1.9807
5 Q C -1.7362
6 L C 0.0000
7 V C 0.9888
8 E C 0.0000
9 S C -0.6698
10 G C -1.3095
11 G C -0.8691
12 G C -0.0783
13 L C 1.0568
14 V C 0.0609
15 Q C -1.1799
16 A C -1.4018
17 G C -1.3565
18 G C -0.9509
19 S C -1.3942
20 L C -1.0282
21 R C -2.3680
22 L C 0.0000
23 S C -0.6678
24 C C 0.0000
25 A C -0.0577
26 A C -0.6125
27 S C -1.2444
28 G C -1.9439
29 R C -2.4014
30 T C -1.2771
31 F C -0.4949
32 S C 0.0000
33 T C 0.0000
34 S C 0.0000
35 A C 0.0000
36 M C 0.0000
37 G C 0.0000
38 W C 0.0000
39 F C 0.0000
40 R C -1.4625
41 Q C -2.3127
42 A C -2.0732
43 P C -1.4973
44 G C -2.0507
45 R C -3.5487
46 E C -3.7256
47 R C -3.0911
48 E C -2.9599
49 F C 0.0000
50 V C 0.0000
51 A C 0.0000
52 A C 0.0000
53 I C 0.0000
54 T C 0.0000
55 W C 0.0000
56 T C 0.0000
57 V C 1.3676
58 G C -0.0746
59 N C -0.7801
60 T C -0.3416
61 I C -0.7667
62 Y C -1.1969
63 G C 0.0000
64 D C -2.3536
65 S C -1.6287
66 M C 0.0000
67 K C -2.5160
68 G C -1.8901
69 R C -1.6613
70 F C 0.0000
71 T C -1.0900
72 I C 0.0000
73 S C -0.7793
74 R C -1.2142
75 D C -1.6287
76 R C -1.6094
77 T C -1.4671
78 K C -2.2526
79 N C -1.5008
80 T C -0.9692
81 V C 0.0000
82 D C -1.1284
83 L C 0.0000
84 Q C -1.5689
85 M C 0.0000
86 D C -2.0393
87 S C -1.4285
88 L C 0.0000
89 K C -2.1846
90 P C -1.8043
91 E C -2.2578
92 D C 0.0000
93 T C -0.9345
94 A C 0.0000
95 V C -0.3913
96 Y C 0.0000
97 Y C -0.4843
98 C C 0.0000
99 T C 0.0000
100 A C 0.0000
101 R C -0.4622
102 S C -0.5160
103 R C -0.8157
104 G C 0.0000
105 F C 0.0000
106 V C 0.0900
107 L C -0.4323
108 S C -0.6658
109 D C -1.0941
110 L C 0.0000
111 R C -2.1359
112 S C -1.7189
113 V C -1.6024
114 D C -2.2962
115 S C -1.2284
116 F C -0.7068
117 D C -1.0398
118 Y C -1.1700
119 K C -1.6422
120 G C 0.0000
121 Q C -1.1533
122 G C -0.7606
123 T C -0.6894
124 Q C -1.0142
125 V C 0.0000
126 T C -0.2826
127 V C 0.0000
128 S C -0.7846
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Laboratory of Theory of Biopolymers 2018