| Chain sequence(s) |
A: KGEELFTGVVPILVELDDGDVNGHKFSVSGEGEEGDATYGKLTLKFICTTGKLPVPWPTLVTTLTTTVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGITL
C: QVQLVESGGGLVQAGGSLRLSCAASGRTFSTSAMGWFRQAPGREREFVAAITWTVGNTIYGDSMKGRFTISRDRTKNTVDLQQMDSLKPEDTAVYYCTARSRGFVLSDLRSVDSFDYKGQGTQVTVS input PDB |
| Selected Chain(s) | A,C |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:06:54)
[INFO] Main: Simulation completed successfully. (00:06:57)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 3 | K | A | -2.4298 | |
| 4 | G | A | 0.0000 | |
| 5 | E | A | -2.2673 | |
| 6 | E | A | -2.5823 | |
| 7 | L | A | -1.1504 | |
| 8 | F | A | 0.0000 | |
| 9 | T | A | -0.5137 | |
| 10 | G | A | 0.3586 | |
| 11 | V | A | 1.1195 | |
| 12 | V | A | 0.0000 | |
| 13 | P | A | -1.2343 | |
| 14 | I | A | 0.0000 | |
| 15 | L | A | -0.8178 | |
| 16 | V | A | 0.0000 | |
| 17 | E | A | -1.1251 | |
| 18 | L | A | 0.0000 | |
| 19 | D | A | -2.9158 | |
| 20 | G | A | 0.0000 | |
| 21 | D | A | -2.7619 | |
| 22 | V | A | 0.0000 | |
| 23 | N | A | -2.1118 | |
| 24 | G | A | -1.8035 | |
| 25 | H | A | -2.4554 | |
| 26 | K | A | -3.0908 | |
| 27 | F | A | 0.0000 | |
| 28 | S | A | -1.6079 | |
| 29 | V | A | 0.0000 | |
| 30 | S | A | -0.8406 | |
| 31 | G | A | 0.0000 | |
| 32 | E | A | -2.4538 | |
| 33 | G | A | -2.0255 | |
| 34 | E | A | -2.0215 | |
| 35 | G | A | 0.0000 | |
| 36 | D | A | 0.0975 | |
| 37 | A | A | 0.0000 | |
| 38 | T | A | 0.3204 | |
| 39 | Y | A | 1.2250 | |
| 40 | G | A | 0.0000 | |
| 41 | K | A | 0.0494 | |
| 42 | L | A | 0.0000 | |
| 43 | T | A | -0.8899 | |
| 44 | L | A | 0.0000 | |
| 45 | K | A | -1.4982 | |
| 46 | F | A | 0.0000 | |
| 47 | I | A | -1.0139 | |
| 48 | C | A | 0.0000 | |
| 49 | T | A | -0.7164 | |
| 50 | T | A | -1.1162 | |
| 51 | G | A | -1.6248 | |
| 52 | K | A | -2.2397 | |
| 53 | L | A | 0.0000 | |
| 54 | P | A | -1.1810 | |
| 55 | V | A | 0.0000 | |
| 56 | P | A | 0.0000 | |
| 57 | W | A | 0.0000 | |
| 58 | P | A | 0.0000 | |
| 59 | T | A | 0.0000 | |
| 60 | L | A | 0.0000 | |
| 61 | V | A | 0.0000 | |
| 62 | T | A | -0.0018 | |
| 63 | T | A | 0.0000 | |
| 64 | L | A | 0.0000 | |
| 68 | V | A | 0.1451 | |
| 69 | Q | A | -0.1398 | |
| 70 | C | A | 0.0000 | |
| 71 | F | A | 0.0000 | |
| 72 | S | A | 0.0000 | |
| 73 | R | A | -0.8182 | |
| 74 | Y | A | 0.0000 | |
| 75 | P | A | -1.6120 | |
| 76 | D | A | -2.6028 | |
| 77 | H | A | -1.4889 | |
| 78 | M | A | 0.0000 | |
| 79 | K | A | -3.0412 | |
| 80 | Q | A | -2.3968 | |
| 81 | H | A | -1.5731 | |
| 82 | D | A | 0.0000 | |
| 83 | F | A | 0.0000 | |
| 84 | F | A | 0.0000 | |
| 85 | K | A | 0.0000 | |
| 86 | S | A | -1.0095 | |
| 87 | A | A | 0.0000 | |
| 88 | M | A | 0.0000 | |
| 89 | P | A | 0.0000 | |
| 90 | E | A | -0.8057 | |
| 91 | G | A | 0.0000 | |
| 92 | Y | A | 0.0000 | |
| 93 | V | A | -0.4392 | |
| 94 | Q | A | 0.0000 | |
| 95 | E | A | -2.0988 | |
| 96 | R | A | 0.0000 | |
| 97 | T | A | -0.4084 | |
| 98 | I | A | 0.0000 | |
| 99 | F | A | 0.3694 | |
| 100 | F | A | 0.0000 | |
| 101 | K | A | -1.9510 | |
| 102 | D | A | -2.6490 | |
| 103 | D | A | -2.3796 | |
| 104 | G | A | 0.0000 | |
| 105 | N | A | -0.6650 | |
| 106 | Y | A | 0.0000 | |
| 107 | K | A | -1.5998 | |
| 108 | T | A | 0.0000 | |
| 109 | R | A | -3.0460 | |
| 110 | A | A | 0.0000 | |
| 111 | E | A | 0.0000 | |
| 112 | V | A | 0.0000 | |
| 113 | K | A | 0.0000 | |
| 114 | F | A | 0.0000 | |
| 115 | E | A | 0.0000 | |
| 116 | G | A | 0.0000 | |
| 117 | D | A | -1.5687 | |
| 118 | T | A | -0.7983 | |
| 119 | L | A | 0.0000 | |
| 120 | V | A | 0.0000 | |
| 121 | N | A | 0.0000 | |
| 122 | R | A | -0.9608 | |
| 123 | I | A | 0.0000 | |
| 124 | E | A | -3.0421 | |
| 125 | L | A | 0.0000 | |
| 126 | K | A | -2.7031 | |
| 127 | G | A | 0.0000 | |
| 128 | I | A | -1.0067 | |
| 129 | D | A | -2.2208 | |
| 130 | F | A | 0.0000 | |
| 131 | K | A | -3.9226 | |
| 132 | E | A | -3.9154 | |
| 133 | D | A | -3.4762 | |
| 134 | G | A | -2.7519 | |
| 135 | N | A | -1.9144 | |
| 136 | I | A | 0.0000 | |
| 137 | L | A | -1.7164 | |
| 138 | G | A | -2.0080 | |
| 139 | H | A | -1.6242 | |
| 140 | K | A | -2.1513 | |
| 141 | L | A | -1.3674 | |
| 142 | E | A | -1.5809 | |
| 143 | Y | A | -0.5531 | |
| 144 | N | A | -0.4122 | |
| 145 | Y | A | -0.5840 | |
| 146 | N | A | -0.8614 | |
| 147 | S | A | -0.8757 | |
| 148 | H | A | 0.0000 | |
| 149 | N | A | -1.4074 | |
| 150 | V | A | 0.0000 | |
| 151 | Y | A | -0.0151 | |
| 152 | I | A | 0.0000 | |
| 153 | M | A | -0.9579 | |
| 154 | A | A | -1.6847 | |
| 155 | D | A | 0.0000 | |
| 156 | K | A | -3.1485 | |
| 157 | Q | A | -3.1068 | |
| 158 | K | A | -3.3843 | |
| 159 | N | A | -2.7622 | |
| 160 | G | A | 0.0000 | |
| 161 | I | A | 0.0000 | |
| 162 | K | A | -1.2139 | |
| 163 | V | A | 0.0000 | |
| 164 | N | A | -0.7360 | |
| 165 | F | A | 0.0000 | |
| 166 | K | A | -1.5894 | |
| 167 | I | A | 0.0000 | |
| 168 | R | A | -1.0144 | |
| 169 | H | A | 0.0000 | |
| 170 | N | A | -1.1161 | |
| 171 | I | A | 0.0000 | |
| 172 | E | A | -3.1690 | |
| 173 | D | A | -2.9906 | |
| 174 | G | A | -1.8714 | |
| 175 | S | A | -0.8338 | |
| 176 | V | A | 0.1461 | |
| 177 | Q | A | 0.0000 | |
| 178 | L | A | -0.6466 | |
| 179 | A | A | 0.0000 | |
| 180 | D | A | -0.7395 | |
| 181 | H | A | 0.0000 | |
| 182 | Y | A | 0.3125 | |
| 183 | Q | A | 0.0000 | |
| 184 | Q | A | -1.3868 | |
| 185 | N | A | 0.0000 | |
| 186 | T | A | -0.8136 | |
| 187 | P | A | -0.7734 | |
| 188 | I | A | -0.4050 | |
| 189 | G | A | -1.1921 | |
| 190 | D | A | -2.1687 | |
| 191 | G | A | -1.3777 | |
| 192 | P | A | -0.9023 | |
| 193 | V | A | -0.4152 | |
| 194 | L | A | -0.1276 | |
| 195 | L | A | -0.5899 | |
| 196 | P | A | 0.0000 | |
| 197 | D | A | -2.2643 | |
| 198 | N | A | -1.6602 | |
| 199 | H | A | 0.0000 | |
| 200 | Y | A | -0.0268 | |
| 201 | L | A | 0.0000 | |
| 202 | S | A | -0.4970 | |
| 203 | T | A | -0.5691 | |
| 204 | Q | A | -0.8889 | |
| 205 | S | A | -0.2439 | |
| 206 | A | A | 0.1318 | |
| 207 | L | A | -0.0576 | |
| 208 | S | A | -0.7036 | |
| 209 | K | A | -1.7676 | |
| 210 | D | A | -2.0073 | |
| 211 | P | A | -1.7566 | |
| 212 | N | A | -2.3715 | |
| 213 | E | A | -2.5548 | |
| 214 | K | A | -2.9373 | |
| 215 | R | A | -2.9240 | |
| 216 | D | A | -2.1157 | |
| 217 | H | A | 0.0000 | |
| 218 | M | A | 0.0000 | |
| 219 | V | A | -0.3923 | |
| 220 | L | A | 0.0000 | |
| 221 | L | A | 0.2404 | |
| 222 | E | A | 0.2634 | |
| 223 | F | A | 0.9843 | |
| 224 | V | A | 0.0000 | |
| 225 | T | A | -0.1045 | |
| 226 | A | A | 0.0000 | |
| 227 | A | A | -0.0883 | |
| 228 | G | A | -0.1898 | |
| 229 | I | A | 0.2692 | |
| 230 | T | A | 0.7359 | |
| 231 | L | A | 1.2422 | |
| 3 | Q | C | -2.1115 | |
| 4 | V | C | -1.9807 | |
| 5 | Q | C | -1.7362 | |
| 6 | L | C | 0.0000 | |
| 7 | V | C | 0.9888 | |
| 8 | E | C | 0.0000 | |
| 9 | S | C | -0.6698 | |
| 10 | G | C | -1.3095 | |
| 11 | G | C | -0.8691 | |
| 12 | G | C | -0.0783 | |
| 13 | L | C | 1.0568 | |
| 14 | V | C | 0.0609 | |
| 15 | Q | C | -1.1799 | |
| 16 | A | C | -1.4018 | |
| 17 | G | C | -1.3565 | |
| 18 | G | C | -0.9509 | |
| 19 | S | C | -1.3942 | |
| 20 | L | C | -1.0282 | |
| 21 | R | C | -2.3680 | |
| 22 | L | C | 0.0000 | |
| 23 | S | C | -0.6678 | |
| 24 | C | C | 0.0000 | |
| 25 | A | C | -0.0577 | |
| 26 | A | C | -0.6125 | |
| 27 | S | C | -1.2444 | |
| 28 | G | C | -1.9439 | |
| 29 | R | C | -2.4014 | |
| 30 | T | C | -1.2771 | |
| 31 | F | C | -0.4949 | |
| 32 | S | C | 0.0000 | |
| 33 | T | C | 0.0000 | |
| 34 | S | C | 0.0000 | |
| 35 | A | C | 0.0000 | |
| 36 | M | C | 0.0000 | |
| 37 | G | C | 0.0000 | |
| 38 | W | C | 0.0000 | |
| 39 | F | C | 0.0000 | |
| 40 | R | C | -1.4625 | |
| 41 | Q | C | -2.3127 | |
| 42 | A | C | -2.0732 | |
| 43 | P | C | -1.4973 | |
| 44 | G | C | -2.0507 | |
| 45 | R | C | -3.5487 | |
| 46 | E | C | -3.7256 | |
| 47 | R | C | -3.0911 | |
| 48 | E | C | -2.9599 | |
| 49 | F | C | 0.0000 | |
| 50 | V | C | 0.0000 | |
| 51 | A | C | 0.0000 | |
| 52 | A | C | 0.0000 | |
| 53 | I | C | 0.0000 | |
| 54 | T | C | 0.0000 | |
| 55 | W | C | 0.0000 | |
| 56 | T | C | 0.0000 | |
| 57 | V | C | 1.3676 | |
| 58 | G | C | -0.0746 | |
| 59 | N | C | -0.7801 | |
| 60 | T | C | -0.3416 | |
| 61 | I | C | -0.7667 | |
| 62 | Y | C | -1.1969 | |
| 63 | G | C | 0.0000 | |
| 64 | D | C | -2.3536 | |
| 65 | S | C | -1.6287 | |
| 66 | M | C | 0.0000 | |
| 67 | K | C | -2.5160 | |
| 68 | G | C | -1.8901 | |
| 69 | R | C | -1.6613 | |
| 70 | F | C | 0.0000 | |
| 71 | T | C | -1.0900 | |
| 72 | I | C | 0.0000 | |
| 73 | S | C | -0.7793 | |
| 74 | R | C | -1.2142 | |
| 75 | D | C | -1.6287 | |
| 76 | R | C | -1.6094 | |
| 77 | T | C | -1.4671 | |
| 78 | K | C | -2.2526 | |
| 79 | N | C | -1.5008 | |
| 80 | T | C | -0.9692 | |
| 81 | V | C | 0.0000 | |
| 82 | D | C | -1.1284 | |
| 83 | L | C | 0.0000 | |
| 84 | Q | C | -1.5689 | |
| 85 | M | C | 0.0000 | |
| 86 | D | C | -2.0393 | |
| 87 | S | C | -1.4285 | |
| 88 | L | C | 0.0000 | |
| 89 | K | C | -2.1846 | |
| 90 | P | C | -1.8043 | |
| 91 | E | C | -2.2578 | |
| 92 | D | C | 0.0000 | |
| 93 | T | C | -0.9345 | |
| 94 | A | C | 0.0000 | |
| 95 | V | C | -0.3913 | |
| 96 | Y | C | 0.0000 | |
| 97 | Y | C | -0.4843 | |
| 98 | C | C | 0.0000 | |
| 99 | T | C | 0.0000 | |
| 100 | A | C | 0.0000 | |
| 101 | R | C | -0.4622 | |
| 102 | S | C | -0.5160 | |
| 103 | R | C | -0.8157 | |
| 104 | G | C | 0.0000 | |
| 105 | F | C | 0.0000 | |
| 106 | V | C | 0.0900 | |
| 107 | L | C | -0.4323 | |
| 108 | S | C | -0.6658 | |
| 109 | D | C | -1.0941 | |
| 110 | L | C | 0.0000 | |
| 111 | R | C | -2.1359 | |
| 112 | S | C | -1.7189 | |
| 113 | V | C | -1.6024 | |
| 114 | D | C | -2.2962 | |
| 115 | S | C | -1.2284 | |
| 116 | F | C | -0.7068 | |
| 117 | D | C | -1.0398 | |
| 118 | Y | C | -1.1700 | |
| 119 | K | C | -1.6422 | |
| 120 | G | C | 0.0000 | |
| 121 | Q | C | -1.1533 | |
| 122 | G | C | -0.7606 | |
| 123 | T | C | -0.6894 | |
| 124 | Q | C | -1.0142 | |
| 125 | V | C | 0.0000 | |
| 126 | T | C | -0.2826 | |
| 127 | V | C | 0.0000 | |
| 128 | S | C | -0.7846 |