| Chain sequence(s) |
H: QVQLVESGGGLVQPGGSLRLSCAASGFTFNSYWINWVRQAPGKGLEWVSGIAYDSSNTLYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARGLGAFHWDMQPDYWGQGTLVTVSS
L: SYELTQPPSVSVAPGQTARISCSGDNIGGTFVSWYQQKPGQAPVLVIYDDNDRPSGIPERFSGSNSGNTATLTISGTQAEDEADYYCGTWDMVTNNVFGGGTK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:47)
[INFO] Main: Simulation completed successfully. (00:00:48)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.4835 | |
| 2 | V | H | -0.8902 | |
| 3 | Q | H | -0.9722 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 1.0642 | |
| 6 | E | H | 0.4278 | |
| 7 | S | H | -0.0772 | |
| 8 | G | H | -0.4896 | |
| 9 | G | H | 0.2559 | |
| 11 | G | H | 0.8302 | |
| 12 | L | H | 1.4275 | |
| 13 | V | H | 0.0666 | |
| 14 | Q | H | -1.2693 | |
| 15 | P | H | -1.5345 | |
| 16 | G | H | -1.4277 | |
| 17 | G | H | -1.0801 | |
| 18 | S | H | -1.2159 | |
| 19 | L | H | -0.5234 | |
| 20 | R | H | -1.1768 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.1513 | |
| 23 | C | H | 0.0000 | |
| 24 | A | H | -0.1389 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.9008 | |
| 27 | G | H | -1.0129 | |
| 28 | F | H | -0.4502 | |
| 29 | T | H | -0.2810 | |
| 30 | F | H | 0.0000 | |
| 35 | N | H | -1.2073 | |
| 36 | S | H | -0.0764 | |
| 37 | Y | H | 0.5052 | |
| 38 | W | H | 0.0000 | |
| 39 | I | H | 0.0000 | |
| 40 | N | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.6309 | |
| 45 | A | H | -1.0074 | |
| 46 | P | H | -0.8074 | |
| 47 | G | H | -1.4503 | |
| 48 | K | H | -2.2571 | |
| 49 | G | H | -1.4405 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.8272 | |
| 52 | W | H | 0.0000 | |
| 53 | V | H | 0.0000 | |
| 54 | S | H | 0.0000 | |
| 55 | G | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | A | H | 0.0000 | |
| 58 | Y | H | -0.1029 | |
| 59 | D | H | -1.3399 | |
| 62 | S | H | -1.0935 | |
| 63 | S | H | -0.9477 | |
| 64 | N | H | -0.9099 | |
| 65 | T | H | -0.3969 | |
| 66 | L | H | -0.1425 | |
| 67 | Y | H | -0.7483 | |
| 68 | A | H | -1.3166 | |
| 69 | D | H | -2.4615 | |
| 70 | S | H | -1.7110 | |
| 71 | V | H | 0.0000 | |
| 72 | K | H | -2.5675 | |
| 74 | G | H | -1.8321 | |
| 75 | R | H | -1.6952 | |
| 76 | F | H | 0.0000 | |
| 77 | T | H | -0.7911 | |
| 78 | I | H | 0.0000 | |
| 79 | S | H | -0.3655 | |
| 80 | R | H | -1.0015 | |
| 81 | D | H | -1.6453 | |
| 82 | N | H | -1.8779 | |
| 83 | S | H | -1.6569 | |
| 84 | K | H | -2.4977 | |
| 85 | N | H | -1.9966 | |
| 86 | T | H | -1.0726 | |
| 87 | L | H | 0.0000 | |
| 88 | Y | H | -0.2463 | |
| 89 | L | H | 0.0000 | |
| 90 | Q | H | -0.9309 | |
| 91 | M | H | 0.0000 | |
| 92 | N | H | -1.7980 | |
| 93 | S | H | -1.4183 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -1.9644 | |
| 96 | A | H | -1.5247 | |
| 97 | E | H | -2.1094 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.2871 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.7260 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | G | H | 0.0000 | |
| 108 | L | H | 0.5694 | |
| 109 | G | H | 0.6629 | |
| 110 | A | H | 0.8878 | |
| 111 | F | H | 1.7654 | |
| 111A | H | H | 0.9575 | |
| 112A | W | H | 1.4541 | |
| 112 | D | H | 0.7586 | |
| 113 | M | H | 0.0000 | |
| 114 | Q | H | 0.0000 | |
| 115 | P | H | 0.0000 | |
| 116 | D | H | 0.0000 | |
| 117 | Y | H | 1.0408 | |
| 118 | W | H | 0.0000 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.1180 | |
| 121 | G | H | -0.2316 | |
| 122 | T | H | 0.5370 | |
| 123 | L | H | 1.5247 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.4055 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.6885 | |
| 128 | S | H | -0.5905 | |
| 1 | S | L | -0.5541 | |
| 2 | Y | L | -0.6545 | |
| 3 | E | L | -2.0788 | |
| 4 | L | L | 0.0000 | |
| 5 | T | L | -0.9560 | |
| 6 | Q | L | -0.6142 | |
| 7 | P | L | -0.6174 | |
| 8 | P | L | -0.9355 | |
| 9 | S | L | -0.9267 | |
| 11 | V | L | -0.5199 | |
| 12 | S | L | -0.4535 | |
| 13 | V | L | -0.3496 | |
| 14 | A | L | -0.3878 | |
| 15 | P | L | -1.1541 | |
| 16 | G | L | -1.3582 | |
| 17 | Q | L | -1.5496 | |
| 18 | T | L | -1.2962 | |
| 19 | A | L | 0.0000 | |
| 20 | R | L | -1.7820 | |
| 21 | I | L | 0.0000 | |
| 22 | S | L | -0.6360 | |
| 23 | C | L | 0.0000 | |
| 24 | S | L | -1.5268 | |
| 25 | G | L | -2.3053 | |
| 26 | D | L | -3.3912 | |
| 27 | N | L | -3.0906 | |
| 28 | I | L | 0.0000 | |
| 29 | G | L | -1.7501 | |
| 36 | G | L | -1.1818 | |
| 37 | T | L | 0.2581 | |
| 38 | F | L | 1.2869 | |
| 39 | V | L | 0.0000 | |
| 40 | S | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.4087 | |
| 46 | P | L | -1.2944 | |
| 47 | G | L | -1.3831 | |
| 48 | Q | L | -1.6495 | |
| 49 | A | L | -0.6970 | |
| 50 | P | L | 0.0000 | |
| 51 | V | L | 1.5959 | |
| 52 | L | L | 0.0000 | |
| 53 | V | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | -0.6873 | |
| 56 | D | L | -0.9286 | |
| 57 | D | L | -1.1044 | |
| 65 | N | L | -2.2020 | |
| 66 | D | L | -2.4509 | |
| 67 | R | L | -1.8130 | |
| 68 | P | L | -0.6016 | |
| 69 | S | L | -0.6297 | |
| 70 | G | L | -0.7318 | |
| 71 | I | L | -0.3569 | |
| 72 | P | L | -1.1209 | |
| 74 | E | L | -2.0825 | |
| 75 | R | L | -1.3073 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -1.4795 | |
| 78 | G | L | -1.4526 | |
| 79 | S | L | -1.1086 | |
| 80 | N | L | -1.0039 | |
| 83 | S | L | -1.4089 | |
| 84 | G | L | -2.2543 | |
| 85 | N | L | -2.9882 | |
| 86 | T | L | -1.6247 | |
| 87 | A | L | 0.0000 | |
| 88 | T | L | -0.8765 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.9463 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.3893 | |
| 93 | G | L | -1.3781 | |
| 94 | T | L | 0.0000 | |
| 95 | Q | L | -2.0525 | |
| 96 | A | L | -1.7028 | |
| 97 | E | L | -2.6842 | |
| 98 | D | L | 0.0000 | |
| 99 | E | L | -2.9981 | |
| 100 | A | L | -2.0069 | |
| 101 | D | L | -1.5739 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | G | L | 0.0000 | |
| 106 | T | L | 0.0000 | |
| 107 | W | L | 0.0000 | |
| 108 | D | L | 1.1313 | |
| 109 | M | L | 1.9021 | |
| 113 | V | L | 2.2054 | |
| 114 | T | L | 0.6882 | |
| 115 | N | L | 0.0000 | |
| 116 | N | L | 0.0000 | |
| 117 | V | L | -0.2610 | |
| 118 | F | L | -0.2673 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -1.1839 | |
| 121 | G | L | -1.1652 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -2.2040 |