Project name: 3G6A VHVL

Status: done

Started: 2026-03-30 06:36:42
Settings
Chain sequence(s) H: QVQLVESGGGLVQPGGSLRLSCAASGFTFNSYWINWVRQAPGKGLEWVSGIAYDSSNTLYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARGLGAFHWDMQPDYWGQGTLVTVSS
L: SYELTQPPSVSVAPGQTARISCSGDNIGGTFVSWYQQKPGQAPVLVIYDDNDRPSGIPERFSGSNSGNTATLTISGTQAEDEADYYCGTWDMVTNNVFGGGTK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:47)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:48)
Show buried residues

Minimal score value
-3.3912
Maximal score value
2.2054
Average score
-0.5842
Total score value
-131.4535

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.4835
2 V H -0.8902
3 Q H -0.9722
4 L H 0.0000
5 V H 1.0642
6 E H 0.4278
7 S H -0.0772
8 G H -0.4896
9 G H 0.2559
11 G H 0.8302
12 L H 1.4275
13 V H 0.0666
14 Q H -1.2693
15 P H -1.5345
16 G H -1.4277
17 G H -1.0801
18 S H -1.2159
19 L H -0.5234
20 R H -1.1768
21 L H 0.0000
22 S H -0.1513
23 C H 0.0000
24 A H -0.1389
25 A H 0.0000
26 S H -0.9008
27 G H -1.0129
28 F H -0.4502
29 T H -0.2810
30 F H 0.0000
35 N H -1.2073
36 S H -0.0764
37 Y H 0.5052
38 W H 0.0000
39 I H 0.0000
40 N H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.6309
45 A H -1.0074
46 P H -0.8074
47 G H -1.4503
48 K H -2.2571
49 G H -1.4405
50 L H 0.0000
51 E H -0.8272
52 W H 0.0000
53 V H 0.0000
54 S H 0.0000
55 G H 0.0000
56 I H 0.0000
57 A H 0.0000
58 Y H -0.1029
59 D H -1.3399
62 S H -1.0935
63 S H -0.9477
64 N H -0.9099
65 T H -0.3969
66 L H -0.1425
67 Y H -0.7483
68 A H -1.3166
69 D H -2.4615
70 S H -1.7110
71 V H 0.0000
72 K H -2.5675
74 G H -1.8321
75 R H -1.6952
76 F H 0.0000
77 T H -0.7911
78 I H 0.0000
79 S H -0.3655
80 R H -1.0015
81 D H -1.6453
82 N H -1.8779
83 S H -1.6569
84 K H -2.4977
85 N H -1.9966
86 T H -1.0726
87 L H 0.0000
88 Y H -0.2463
89 L H 0.0000
90 Q H -0.9309
91 M H 0.0000
92 N H -1.7980
93 S H -1.4183
94 L H 0.0000
95 R H -1.9644
96 A H -1.5247
97 E H -2.1094
98 D H 0.0000
99 T H -0.2871
100 A H 0.0000
101 V H 0.7260
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 G H 0.0000
108 L H 0.5694
109 G H 0.6629
110 A H 0.8878
111 F H 1.7654
111A H H 0.9575
112A W H 1.4541
112 D H 0.7586
113 M H 0.0000
114 Q H 0.0000
115 P H 0.0000
116 D H 0.0000
117 Y H 1.0408
118 W H 0.0000
119 G H 0.0000
120 Q H -1.1180
121 G H -0.2316
122 T H 0.5370
123 L H 1.5247
124 V H 0.0000
125 T H 0.4055
126 V H 0.0000
127 S H -0.6885
128 S H -0.5905
1 S L -0.5541
2 Y L -0.6545
3 E L -2.0788
4 L L 0.0000
5 T L -0.9560
6 Q L -0.6142
7 P L -0.6174
8 P L -0.9355
9 S L -0.9267
11 V L -0.5199
12 S L -0.4535
13 V L -0.3496
14 A L -0.3878
15 P L -1.1541
16 G L -1.3582
17 Q L -1.5496
18 T L -1.2962
19 A L 0.0000
20 R L -1.7820
21 I L 0.0000
22 S L -0.6360
23 C L 0.0000
24 S L -1.5268
25 G L -2.3053
26 D L -3.3912
27 N L -3.0906
28 I L 0.0000
29 G L -1.7501
36 G L -1.1818
37 T L 0.2581
38 F L 1.2869
39 V L 0.0000
40 S L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.4087
46 P L -1.2944
47 G L -1.3831
48 Q L -1.6495
49 A L -0.6970
50 P L 0.0000
51 V L 1.5959
52 L L 0.0000
53 V L 0.0000
54 I L 0.0000
55 Y L -0.6873
56 D L -0.9286
57 D L -1.1044
65 N L -2.2020
66 D L -2.4509
67 R L -1.8130
68 P L -0.6016
69 S L -0.6297
70 G L -0.7318
71 I L -0.3569
72 P L -1.1209
74 E L -2.0825
75 R L -1.3073
76 F L 0.0000
77 S L -1.4795
78 G L -1.4526
79 S L -1.1086
80 N L -1.0039
83 S L -1.4089
84 G L -2.2543
85 N L -2.9882
86 T L -1.6247
87 A L 0.0000
88 T L -0.8765
89 L L 0.0000
90 T L -0.9463
91 I L 0.0000
92 S L -1.3893
93 G L -1.3781
94 T L 0.0000
95 Q L -2.0525
96 A L -1.7028
97 E L -2.6842
98 D L 0.0000
99 E L -2.9981
100 A L -2.0069
101 D L -1.5739
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 G L 0.0000
106 T L 0.0000
107 W L 0.0000
108 D L 1.1313
109 M L 1.9021
113 V L 2.2054
114 T L 0.6882
115 N L 0.0000
116 N L 0.0000
117 V L -0.2610
118 F L -0.2673
119 G L 0.0000
120 G L -1.1839
121 G L -1.1652
122 T L 0.0000
123 K L -2.2040
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Laboratory of Theory of Biopolymers 2018