Project name: query_structure

Status: done

Started: 2026-03-17 01:18:46
Settings
Chain sequence(s) A: VSSVPTKLEVVAATPTSLLISWDAFDGYWYDYVSFYRITYGESGGNSPVQEFTVPSSSSTATISGLKPGVDYTITVYAYSHSQQQYLSPNSINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:16)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:18)
Show buried residues

Minimal score value
-2.9407
Maximal score value
1.6988
Average score
-0.5311
Total score value
-50.9829

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.6552
2 S A 0.5699
3 S A 0.3297
4 V A -0.1227
5 P A 0.0000
6 T A -1.2281
7 K A -2.5304
8 L A 0.0000
9 E A -1.4012
10 V A 0.4280
11 V A 1.6988
12 A A 0.9729
13 A A 0.3093
14 T A -0.5413
15 P A -1.1526
16 T A -1.0058
17 S A -0.5434
18 L A 0.0000
19 L A 0.8270
20 I A 0.0000
21 S A -0.5900
22 W A 0.0000
23 D A -2.6260
24 A A -1.2503
25 F A -0.3273
26 D A -1.1226
27 G A 0.3894
28 Y A 1.6139
29 W A 1.6678
30 Y A 1.2450
31 D A -0.3451
32 Y A 0.0894
33 V A 0.0000
34 S A -0.3781
35 F A 0.2599
36 Y A 0.0000
37 R A -0.3347
38 I A 0.0000
39 T A 0.0000
40 Y A -0.3003
41 G A 0.0000
42 E A -1.8619
43 S A -1.8225
44 G A -1.4101
45 G A -1.5385
46 N A -1.5400
47 S A -0.8419
48 P A -0.3290
49 V A 0.4206
50 Q A -0.8756
51 E A -1.6296
52 F A -0.6677
53 T A -0.2361
54 V A 0.0000
55 P A -0.2663
56 S A -0.0017
57 S A -0.0946
58 S A -0.4248
59 S A -0.5666
60 T A -0.2191
61 A A 0.0000
62 T A 0.2386
63 I A 0.0000
64 S A -0.6638
65 G A -1.0365
66 L A 0.0000
67 K A -2.4925
68 P A -1.7798
69 G A -1.6339
70 V A -1.8735
71 D A -2.9407
72 Y A 0.0000
73 T A -0.9080
74 I A 0.0000
75 T A -0.3413
76 V A 0.0000
77 Y A 0.1830
78 A A 0.0000
79 Y A -0.1386
80 S A 0.0000
81 H A -1.9364
82 S A -1.5595
83 Q A -1.8771
84 Q A -2.2764
85 Q A -1.6709
86 Y A -0.1223
87 L A 0.1441
88 S A -0.0982
89 P A -0.1782
90 N A -0.7047
91 S A -0.7568
92 I A -0.6664
93 N A -1.8369
94 Y A -1.6480
95 R A -2.9063
96 T A -1.8528
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018