| Chain sequence(s) |
A: GGGHKFG
C: GGGHKFG B: GGGHKFG E: GGGHKFG D: GGGHKFG G: GGGHKFG F: GGGHKFG I: GGGHKFG H: GGGHKFG K: GGGHKFG J: GGGHKFG M: GGGHKFG L: GGGHKFG O: GGGHKFG N: GGGHKFG Q: GGGHKFG P: GGGHKFG S: GGGHKFG R: GGGHKFG T: GGGHKFG input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:04:56)
[INFO] Main: Simulation completed successfully. (00:05:01)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.2348 | |
| 2 | G | A | -1.2541 | |
| 3 | G | A | -1.5408 | |
| 4 | H | A | -1.7300 | |
| 5 | K | A | -2.3687 | |
| 6 | F | A | 0.0000 | |
| 7 | G | A | -1.4626 | |
| 1 | G | B | -1.2229 | |
| 2 | G | B | -1.2447 | |
| 3 | G | B | -1.4784 | |
| 4 | H | B | -1.5971 | |
| 5 | K | B | -2.1491 | |
| 6 | F | B | 0.0000 | |
| 7 | G | B | -1.3903 | |
| 1 | G | C | -1.2350 | |
| 2 | G | C | -1.2576 | |
| 3 | G | C | -1.5181 | |
| 4 | H | C | -1.6692 | |
| 5 | K | C | -2.2703 | |
| 6 | F | C | 0.0000 | |
| 7 | G | C | -1.4323 | |
| 1 | G | D | -1.2530 | |
| 2 | G | D | -1.2843 | |
| 3 | G | D | -1.5639 | |
| 4 | H | D | -1.7589 | |
| 5 | K | D | -2.4217 | |
| 6 | F | D | 0.0000 | |
| 7 | G | D | -1.4647 | |
| 1 | G | E | -1.2504 | |
| 2 | G | E | -1.3346 | |
| 3 | G | E | -1.6250 | |
| 4 | H | E | -1.8749 | |
| 5 | K | E | -2.5265 | |
| 6 | F | E | 0.0000 | |
| 7 | G | E | -1.4975 | |
| 1 | G | F | -1.2867 | |
| 2 | G | F | -1.4789 | |
| 3 | G | F | -2.0721 | |
| 4 | H | F | -2.3011 | |
| 5 | K | F | -2.7987 | |
| 6 | F | F | 0.0000 | |
| 7 | G | F | -1.3983 | |
| 1 | G | G | -1.1580 | |
| 2 | G | G | -1.4028 | |
| 3 | G | G | -2.1254 | |
| 4 | H | G | -2.4541 | |
| 5 | K | G | -2.7353 | |
| 6 | F | G | -1.3922 | |
| 7 | G | G | -1.0416 | |
| 1 | G | H | -1.1512 | |
| 2 | G | H | -1.3741 | |
| 3 | G | H | -2.0441 | |
| 4 | H | H | -2.3895 | |
| 5 | K | H | -2.7262 | |
| 6 | F | H | -1.8172 | |
| 7 | G | H | -1.0485 | |
| 1 | G | I | -1.2670 | |
| 2 | G | I | -1.4433 | |
| 3 | G | I | -1.9979 | |
| 4 | H | I | -2.2602 | |
| 5 | K | I | -2.6452 | |
| 6 | F | I | 0.0000 | |
| 7 | G | I | -1.4601 | |
| 1 | G | J | -1.2222 | |
| 2 | G | J | -1.3165 | |
| 3 | G | J | -1.5435 | |
| 4 | H | J | -1.7473 | |
| 5 | K | J | -2.3595 | |
| 6 | F | J | 0.0000 | |
| 7 | G | J | -1.4179 | |
| 1 | G | K | -1.2281 | |
| 2 | G | K | -1.2383 | |
| 3 | G | K | -1.5076 | |
| 4 | H | K | -1.6514 | |
| 5 | K | K | -2.2103 | |
| 6 | F | K | 0.0000 | |
| 7 | G | K | -1.4277 | |
| 1 | G | L | -1.2470 | |
| 2 | G | L | -1.2612 | |
| 3 | G | L | -1.5458 | |
| 4 | H | L | -1.7149 | |
| 5 | K | L | -2.3895 | |
| 6 | F | L | 0.0000 | |
| 7 | G | L | -1.4703 | |
| 1 | G | M | -1.2653 | |
| 2 | G | M | -1.2957 | |
| 3 | G | M | -1.5703 | |
| 4 | H | M | -1.7240 | |
| 5 | K | M | -2.2960 | |
| 6 | F | M | 0.0000 | |
| 7 | G | M | -1.4354 | |
| 1 | G | N | -1.3058 | |
| 2 | G | N | -1.3656 | |
| 3 | G | N | -1.6622 | |
| 4 | H | N | -1.8981 | |
| 5 | K | N | -2.5842 | |
| 6 | F | N | 0.0000 | |
| 7 | G | N | -1.4458 | |
| 1 | G | O | -1.3153 | |
| 2 | G | O | -1.5198 | |
| 3 | G | O | -2.0416 | |
| 4 | H | O | -2.1581 | |
| 5 | K | O | -2.4122 | |
| 6 | F | O | 0.0000 | |
| 7 | G | O | -1.1452 | |
| 1 | G | P | -1.2788 | |
| 2 | G | P | -1.3091 | |
| 3 | G | P | -1.6132 | |
| 4 | H | P | -1.7785 | |
| 5 | K | P | -2.4753 | |
| 6 | F | P | 0.0000 | |
| 7 | G | P | -1.4850 | |
| 1 | G | Q | -1.3030 | |
| 2 | G | Q | -1.4949 | |
| 3 | G | Q | -2.0199 | |
| 4 | H | Q | -2.2368 | |
| 5 | K | Q | -2.8372 | |
| 6 | F | Q | 0.0000 | |
| 7 | G | Q | -1.4676 | |
| 1 | G | R | -1.0475 | |
| 2 | G | R | -1.5232 | |
| 3 | G | R | -1.9633 | |
| 4 | H | R | -2.3098 | |
| 5 | K | R | -2.6114 | |
| 6 | F | R | -1.4770 | |
| 7 | G | R | -1.0677 | |
| 1 | G | S | -1.0534 | |
| 2 | G | S | -1.5435 | |
| 3 | G | S | -1.9623 | |
| 4 | H | S | -2.2394 | |
| 5 | K | S | -2.2369 | |
| 6 | F | S | -0.5551 | |
| 7 | G | S | -0.5632 | |
| 1 | G | T | -1.2225 | |
| 2 | G | T | -1.2383 | |
| 3 | G | T | -1.4988 | |
| 4 | H | T | -1.5793 | |
| 5 | K | T | -2.2529 | |
| 6 | F | T | 0.0000 | |
| 7 | G | T | -1.4153 |