| Chain sequence(s) |
H: EVQLVESGGGLVQPGGSLRLSCAASGFAFSSYDMSWVRQAPGKGLDWVATISGGGRYTYYPDSVKGRFTISRDNSKNNLYLQMNSLRAEDTALYYCANRYGEAWFAYWGQGTLVTVSS
L: DIQMTQSPSSMSASVGDRVTFTCRASQDINTYLSWFQQKPGKSPKTLIYRANRLVSGVPSRFSGSGSGQDYTLTISSLQPEDMATYYCLQYDEFPLTFGAGTKLELK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:23)
[INFO] Main: Simulation completed successfully. (00:02:24)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | H | -2.0650 | |
| 2 | V | H | -1.1207 | |
| 3 | Q | H | -1.3547 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.2553 | |
| 6 | E | H | 0.0000 | |
| 7 | S | H | -0.3817 | |
| 8 | G | H | -0.5202 | |
| 9 | G | H | 0.1428 | |
| 11 | G | H | 0.6679 | |
| 12 | L | H | 1.3094 | |
| 13 | V | H | -0.1419 | |
| 14 | Q | H | -1.4517 | |
| 15 | P | H | -1.7116 | |
| 16 | G | H | -1.6762 | |
| 17 | G | H | -1.1861 | |
| 18 | S | H | -1.1170 | |
| 19 | L | H | -0.7622 | |
| 20 | R | H | -1.5570 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.3946 | |
| 23 | C | H | 0.0000 | |
| 24 | A | H | -0.4991 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -1.1502 | |
| 27 | G | H | -1.2474 | |
| 28 | F | H | -0.4669 | |
| 29 | A | H | -0.2398 | |
| 30 | F | H | 0.0000 | |
| 35 | S | H | -1.0096 | |
| 36 | S | H | -0.3906 | |
| 37 | Y | H | -0.0131 | |
| 38 | D | H | -0.2968 | |
| 39 | M | H | 0.0000 | |
| 40 | S | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.9390 | |
| 45 | A | H | -1.2084 | |
| 46 | P | H | -0.9250 | |
| 47 | G | H | -1.5451 | |
| 48 | K | H | -2.3044 | |
| 49 | G | H | -1.5034 | |
| 50 | L | H | 0.0000 | |
| 51 | D | H | -1.7299 | |
| 52 | W | H | 0.0000 | |
| 53 | V | H | 0.0000 | |
| 54 | A | H | 0.0000 | |
| 55 | T | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | S | H | -0.7383 | |
| 58 | G | H | -0.8976 | |
| 59 | G | H | -1.4310 | |
| 62 | G | H | -1.5484 | |
| 63 | R | H | -1.8973 | |
| 64 | Y | H | -0.6272 | |
| 65 | T | H | -0.1735 | |
| 66 | Y | H | 0.0807 | |
| 67 | Y | H | -0.7546 | |
| 68 | P | H | -1.3915 | |
| 69 | D | H | -2.4566 | |
| 70 | S | H | -1.8503 | |
| 71 | V | H | 0.0000 | |
| 72 | K | H | -2.5962 | |
| 74 | G | H | -1.8097 | |
| 75 | R | H | -1.4342 | |
| 76 | F | H | 0.0000 | |
| 77 | T | H | -0.7551 | |
| 78 | I | H | 0.0000 | |
| 79 | S | H | -0.6676 | |
| 80 | R | H | -1.3848 | |
| 81 | D | H | -2.1827 | |
| 82 | N | H | -2.6214 | |
| 83 | S | H | -2.0772 | |
| 84 | K | H | -2.7201 | |
| 85 | N | H | -2.1223 | |
| 86 | N | H | -1.4503 | |
| 87 | L | H | 0.0000 | |
| 88 | Y | H | -0.4754 | |
| 89 | L | H | 0.0000 | |
| 90 | Q | H | -1.0227 | |
| 91 | M | H | 0.0000 | |
| 92 | N | H | -1.6280 | |
| 93 | S | H | -1.5286 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -2.9207 | |
| 96 | A | H | -2.0205 | |
| 97 | E | H | -2.3875 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.5483 | |
| 100 | A | H | 0.0000 | |
| 101 | L | H | 0.5230 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | N | H | 0.0000 | |
| 107 | R | H | 0.0000 | |
| 108 | Y | H | 0.1425 | |
| 109 | G | H | -0.8008 | |
| 110 | E | H | -1.7937 | |
| 113 | A | H | 0.0000 | |
| 114 | W | H | 0.0000 | |
| 115 | F | H | 0.0000 | |
| 116 | A | H | 0.2829 | |
| 117 | Y | H | 0.0071 | |
| 118 | W | H | -0.3722 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.3448 | |
| 121 | G | H | -0.4807 | |
| 122 | T | H | 0.2683 | |
| 123 | L | H | 1.1359 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.1581 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.6465 | |
| 128 | S | H | -0.5708 | |
| 1 | D | L | -2.2780 | |
| 2 | I | L | 0.0000 | |
| 3 | Q | L | -2.1182 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -1.1839 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.5852 | |
| 8 | P | L | -0.5036 | |
| 9 | S | L | -0.6517 | |
| 10 | S | L | -0.9793 | |
| 11 | M | L | -0.8189 | |
| 12 | S | L | -1.0703 | |
| 13 | A | L | 0.0000 | |
| 14 | S | L | -0.7984 | |
| 15 | V | L | 0.1443 | |
| 16 | G | L | -0.7187 | |
| 17 | D | L | -1.6386 | |
| 18 | R | L | -2.3138 | |
| 19 | V | L | 0.0000 | |
| 20 | T | L | -0.6427 | |
| 21 | F | L | 0.0000 | |
| 22 | T | L | -0.8213 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -3.0160 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -2.2212 | |
| 27 | Q | L | -2.8967 | |
| 28 | D | L | -3.2701 | |
| 29 | I | L | 0.0000 | |
| 36 | N | L | -2.3704 | |
| 37 | T | L | -1.5133 | |
| 38 | Y | L | -0.9994 | |
| 39 | L | L | 0.0000 | |
| 40 | S | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | F | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.8099 | |
| 46 | P | L | -1.3087 | |
| 47 | G | L | -1.7456 | |
| 48 | K | L | -2.6394 | |
| 49 | S | L | -1.6782 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -1.5441 | |
| 52 | T | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | -0.8684 | |
| 56 | R | L | -1.4999 | |
| 57 | A | L | 0.0000 | |
| 65 | N | L | -1.6895 | |
| 66 | R | L | -1.9701 | |
| 67 | L | L | -0.5068 | |
| 68 | V | L | -0.1119 | |
| 69 | S | L | -0.3538 | |
| 70 | G | L | -0.4595 | |
| 71 | V | L | 0.0000 | |
| 72 | P | L | -0.3574 | |
| 74 | S | L | -0.3681 | |
| 75 | R | L | -0.7753 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.7660 | |
| 78 | G | L | -0.9328 | |
| 79 | S | L | -1.1247 | |
| 80 | G | L | -1.4169 | |
| 83 | S | L | -1.7677 | |
| 84 | G | L | -2.3030 | |
| 85 | Q | L | -2.8069 | |
| 86 | D | L | -2.5933 | |
| 87 | Y | L | 0.0000 | |
| 88 | T | L | -0.8112 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.6208 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.3224 | |
| 93 | S | L | -1.0922 | |
| 94 | L | L | 0.0000 | |
| 95 | Q | L | -0.9207 | |
| 96 | P | L | -1.1356 | |
| 97 | E | L | -1.7899 | |
| 98 | D | L | 0.0000 | |
| 99 | M | L | -0.9196 | |
| 100 | A | L | 0.0000 | |
| 101 | T | L | -0.8039 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | L | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | Y | L | -0.6487 | |
| 108 | D | L | -1.5009 | |
| 109 | E | L | -1.3166 | |
| 114 | F | L | -0.3500 | |
| 115 | P | L | -0.6231 | |
| 116 | L | L | 0.0000 | |
| 117 | T | L | -0.8106 | |
| 118 | F | L | -0.2801 | |
| 119 | G | L | -0.6188 | |
| 120 | A | L | -0.6178 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.5027 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -1.6897 | |
| 126 | L | L | -0.9717 | |
| 127 | K | L | -1.5837 |