| Chain sequence(s) |
A: FYGHKYF
C: FYGHKYF B: FYGHKYF E: FYGHKYF D: FYGHKYF G: FYGHKYF F: FYGHKYF I: FYGHKYF H: FYGHKYF K: FYGHKYF J: FYGHKYF L: FYGHKYF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:04:13)
[INFO] Main: Simulation completed successfully. (00:04:18)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 2.6981 | |
| 2 | Y | A | 2.3975 | |
| 3 | G | A | 1.3803 | |
| 4 | H | A | 0.5824 | |
| 5 | K | A | 1.1142 | |
| 6 | Y | A | 2.2412 | |
| 7 | F | A | 3.1117 | |
| 1 | F | B | 3.1273 | |
| 2 | Y | B | 1.5121 | |
| 3 | G | B | -0.0141 | |
| 4 | H | B | -0.3448 | |
| 5 | K | B | -0.3208 | |
| 6 | Y | B | 2.0307 | |
| 7 | F | B | 3.2006 | |
| 1 | F | C | 3.4692 | |
| 2 | Y | C | 1.8620 | |
| 3 | G | C | 0.5880 | |
| 4 | H | C | -0.1253 | |
| 5 | K | C | 0.3063 | |
| 6 | Y | C | 2.6698 | |
| 7 | F | C | 3.5380 | |
| 1 | F | D | 2.9470 | |
| 2 | Y | D | 2.1233 | |
| 3 | G | D | 0.7712 | |
| 4 | H | D | 0.0943 | |
| 5 | K | D | -0.7377 | |
| 6 | Y | D | 1.4536 | |
| 7 | F | D | 2.9827 | |
| 1 | F | E | 2.5801 | |
| 2 | Y | E | 1.9087 | |
| 3 | G | E | 0.6543 | |
| 4 | H | E | 0.5911 | |
| 5 | K | E | -0.1536 | |
| 6 | Y | E | 1.5770 | |
| 7 | F | E | 2.2811 | |
| 1 | F | F | 2.8338 | |
| 2 | Y | F | 2.0445 | |
| 3 | G | F | 1.2183 | |
| 4 | H | F | 0.0902 | |
| 5 | K | F | 0.3384 | |
| 6 | Y | F | 1.1409 | |
| 7 | F | F | 1.9291 | |
| 1 | F | G | 2.6624 | |
| 2 | Y | G | 2.9102 | |
| 3 | G | G | 0.0000 | |
| 4 | H | G | 1.5154 | |
| 5 | K | G | 0.4487 | |
| 6 | Y | G | 2.4063 | |
| 7 | F | G | 2.8120 | |
| 1 | F | H | 3.8349 | |
| 2 | Y | H | 2.9362 | |
| 3 | G | H | 0.6156 | |
| 4 | H | H | 0.1274 | |
| 5 | K | H | -1.0323 | |
| 6 | Y | H | 1.1317 | |
| 7 | F | H | 1.8209 | |
| 1 | F | I | 3.9002 | |
| 2 | Y | I | 2.9582 | |
| 3 | G | I | 0.9844 | |
| 4 | H | I | -0.2517 | |
| 5 | K | I | -0.5800 | |
| 6 | Y | I | 1.2004 | |
| 7 | F | I | 1.8142 | |
| 1 | F | J | 2.6687 | |
| 2 | Y | J | 1.9050 | |
| 3 | G | J | 0.1725 | |
| 4 | H | J | 0.0397 | |
| 5 | K | J | 1.0626 | |
| 6 | Y | J | 1.9856 | |
| 7 | F | J | 2.7137 | |
| 1 | F | K | 2.9326 | |
| 2 | Y | K | 1.5714 | |
| 3 | G | K | -0.3696 | |
| 4 | H | K | -1.5914 | |
| 5 | K | K | -1.6692 | |
| 6 | Y | K | 1.0303 | |
| 7 | F | K | 2.2073 | |
| 1 | F | L | 3.2926 | |
| 2 | Y | L | 1.7811 | |
| 3 | G | L | 0.1290 | |
| 4 | H | L | -1.4496 | |
| 5 | K | L | -1.3800 | |
| 6 | Y | L | 1.0876 | |
| 7 | F | L | 2.4003 |