Project name: ec94f11b044629c

Status: done

Started: 2025-03-05 01:50:55
Settings
Chain sequence(s) H: EVQLVESGGGLVQPGRSLRLSCTVAGFNFGDYAMSWVRQAPGKGLEWVGFIRSNTYGGATGYAASVKGRFTISRDDSRNIAYLQMNSLKTEDTALYYCSRVGKDFGDGLFDSWGQGTLVTVSS
L: SVLIQPASVSGSPGQSITISCTGTSSDVGNYNLFSWYQQKPGKVPKLIIYEGYKRPSGVSDRFSGSKSGNTASLTISGLQAEDEADYSCCLYAGRSLWVFGGGTKVTVL
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:53)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:54)
Show buried residues

Minimal score value
-2.897
Maximal score value
2.0326
Average score
-0.6345
Total score value
-147.2009

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -1.8984
2 V H -1.0645
3 Q H -1.0752
4 L H 0.0000
5 V H 0.4447
6 E H 0.0000
7 S H -0.4949
8 G H -0.8082
9 G H -0.1723
10 G H 0.6720
11 L H 1.3202
12 V H 0.0000
13 Q H -1.5066
14 P H -2.0356
15 G H -2.2464
16 R H -2.7436
17 S H -2.0725
18 L H -1.3254
19 R H -2.0423
20 L H 0.0000
21 S H -0.5031
22 C H 0.0000
23 T H -0.1926
24 V H 0.0000
25 A H -0.7440
26 G H -1.2259
27 F H -1.1170
28 N H -1.8610
29 F H 0.0000
30 G H -2.0706
31 D H -2.4360
32 Y H -1.5031
33 A H -0.8420
34 M H 0.0000
35 S H 0.0000
36 W H 0.0000
37 V H 0.0000
38 R H 0.0000
39 Q H -0.8604
40 A H -1.2252
41 P H -1.1171
42 G H -1.4952
43 K H -2.3593
44 G H -1.7753
45 L H 0.0000
46 E H -1.2076
47 W H 0.0000
48 V H 0.0000
49 G H 0.0000
50 F H 0.0000
51 I H 0.0000
52 R H -1.2295
52A S H 0.0000
52B N H -1.7627
52C T H -0.6291
53 Y H 0.2767
54 G H -0.4583
55 G H -0.8265
56 A H -0.4363
57 T H -0.3132
58 G H -0.4133
59 Y H -0.3884
60 A H -0.4194
61 A H -0.5363
62 S H -0.9729
63 V H 0.0000
64 K H -2.0325
65 G H -1.5608
66 R H -1.5693
67 F H 0.0000
68 T H -0.8073
69 I H 0.0000
70 S H -0.3561
71 R H -1.1685
72 D H -1.7241
73 D H -2.4315
74 S H -1.7675
75 R H -2.4996
76 N H -1.9079
77 I H -0.8981
78 A H 0.0000
79 Y H -0.4419
80 L H 0.0000
81 Q H -1.0704
82 M H 0.0000
82A N H -1.8048
82B S H -1.8781
82C L H 0.0000
83 K H -2.8970
84 T H -1.9723
85 E H -2.4514
86 D H 0.0000
87 T H -0.5889
88 A H 0.0000
89 L H 0.5168
90 Y H 0.0000
91 Y H 0.0000
92 C H 0.0000
93 S H 0.0000
94 R H 0.0000
95 V H -0.7665
96 G H 0.0000
97 K H -2.7245
98 D H -2.3236
99 F H -0.9203
100 G H -1.3847
100A D H -1.5892
100B G H 0.0000
100C L H 0.0000
100D F H 0.0000
101 D H -1.0401
102 S H -0.4404
103 W H 0.0000
104 G H 0.0000
105 Q H -1.2780
106 G H -0.1508
107 T H 0.2578
108 L H 1.1748
109 V H 0.0000
110 T H 0.2295
111 V H 0.0000
112 S H -0.6496
113 S H -0.4289
2 S L 0.6544
3 V L 2.0326
4 L L 0.0000
5 I L 1.9819
6 Q L 0.5132
7 P L -0.0838
8 A L -0.5007
9 S L -0.9825
11 V L -0.3903
12 S L -0.1195
13 G L 0.0000
14 S L -0.1420
15 P L -0.7901
16 G L -1.4597
17 Q L -1.6296
18 S L -1.2065
19 I L 0.0000
20 T L -0.1831
21 I L 0.0000
22 S L 0.0369
23 C L 0.0000
24 T L 0.5764
25 G L 0.1941
26 T L -0.0738
27 S L -0.5516
27A S L -0.6166
27B D L -1.5119
27C V L 0.1874
28 G L -0.6037
29 N L -1.1606
30 Y L -0.1359
31 N L 0.0000
32 L L 0.0000
33 F L 0.0000
34 S L 0.0000
35 W L 0.0000
36 Y L 0.0000
37 Q L 0.0000
38 Q L -2.0244
39 K L -2.5575
40 P L -1.6559
41 G L -1.6359
42 K L -2.3573
43 V L -1.2040
44 P L 0.0000
45 K L -1.3383
46 L L 0.0000
47 I L 0.0000
48 I L 0.0000
49 Y L 0.0000
50 E L -0.9427
51 G L 0.0000
52 Y L 0.1805
53 K L -0.7777
54 R L -1.0769
55 P L -0.6780
56 S L -0.5194
57 G L -0.7789
58 V L -0.8534
59 S L -1.2532
60 D L -2.2132
61 R L -1.5853
62 F L 0.0000
63 S L -0.6116
64 G L -0.2476
65 S L -0.6361
66 K L -1.2084
67 S L -1.1612
68 G L -1.3107
69 N L -1.3954
70 T L -0.5845
71 A L 0.0000
72 S L -0.3625
73 L L 0.0000
74 T L -0.3584
75 I L 0.0000
76 S L -1.2849
77 G L -1.4532
78 L L 0.0000
79 Q L -1.6839
80 A L -1.2953
81 E L -2.3824
82 D L 0.0000
83 E L -2.2572
84 A L 0.0000
85 D L -2.6745
86 Y L 0.0000
87 S L 0.0000
88 C L 0.0000
89 C L 0.0000
90 L L 0.0000
91 Y L -0.0173
92 A L -0.2135
93 G L -0.6430
94 R L -1.3322
95 S L -0.6361
95A L L 0.2902
96 W L 0.0000
97 V L 0.5605
98 F L 0.0000
99 G L 0.0000
100 G L -0.6665
101 G L -1.1913
102 T L 0.0000
103 K L -2.5563
104 V L 0.0000
105 T L -0.8019
106 V L -0.0870
106A L L 1.2771
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018