Project name: RF_Diffus [mutate: IA4A] [mutate: AR4A]

Status: done

Started: 2026-03-05 17:46:16
Settings
Chain sequence(s) A: RSGATSVEALPPEERA
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues AR4A
Energy difference between WT (input) and mutated protein (by FoldX) -0.660632 kcal/mol
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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       FoldX:    Building mutant model                                                       (00:00:08)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:18)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:26)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:26)
Show buried residues

Minimal score value
-3.5759
Maximal score value
-0.5798
Average score
-2.2267
Total score value
-35.6274

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 R A -3.5255
2 S A -2.6382
3 G A -2.5724
4 R A -2.7196 mutated: AR4A
5 T A -2.1495
6 S A -1.0845
7 V A -1.1121
8 E A -1.5776
9 A A -0.5798
10 L A -0.9957
11 P A -1.3636
12 P A -2.3441
13 E A -3.2931
14 E A -3.5759
15 R A -3.1977
16 A A -2.8981
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Laboratory of Theory of Biopolymers 2018