| Chain sequence(s) |
A: RSGATSVEALPPEERA
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | AR4A |
| Energy difference between WT (input) and mutated protein (by FoldX) | -0.660632 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] FoldX: Building mutant model (00:00:08)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:18)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:26)
[INFO] Main: Simulation completed successfully. (00:00:26)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | R | A | -3.5255 | |
| 2 | S | A | -2.6382 | |
| 3 | G | A | -2.5724 | |
| 4 | R | A | -2.7196 | mutated: AR4A |
| 5 | T | A | -2.1495 | |
| 6 | S | A | -1.0845 | |
| 7 | V | A | -1.1121 | |
| 8 | E | A | -1.5776 | |
| 9 | A | A | -0.5798 | |
| 10 | L | A | -0.9957 | |
| 11 | P | A | -1.3636 | |
| 12 | P | A | -2.3441 | |
| 13 | E | A | -3.2931 | |
| 14 | E | A | -3.5759 | |
| 15 | R | A | -3.1977 | |
| 16 | A | A | -2.8981 |