| Chain sequence(s) |
H: QVQLQQSAAEVARPGASVKMSCKASGYTFTSYTMHWLKQRPGQGLEWIGYINPSSGYTDYNQKFKDKTTLTADKSSSTAYMQLNSLTSEDSAVYYCTRGTLLGLSWGQGTTLTVSS
L: DIKMTQSPSSLSASLGERVSLTCRASQEISGYLSWLQQKPDGTIKRLIYAASTLDSGVPKRFSGSRSGSDYSLTISSLESEDFADYYCLQYASYPYTFGGGTRLEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:28)
[INFO] Main: Simulation completed successfully. (00:02:30)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.2741 | |
| 2 | V | H | -0.5184 | |
| 3 | Q | H | -1.8413 | |
| 4 | L | H | 0.0000 | |
| 5 | Q | H | -2.1211 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -0.7993 | |
| 8 | A | H | -0.4656 | |
| 9 | A | H | 0.0464 | |
| 11 | E | H | -0.1714 | |
| 12 | V | H | 0.9076 | |
| 13 | A | H | -0.4993 | |
| 14 | R | H | -1.9284 | |
| 15 | P | H | -1.5927 | |
| 16 | G | H | -1.2608 | |
| 17 | A | H | -1.0610 | |
| 18 | S | H | -1.0952 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -1.2135 | |
| 21 | M | H | 0.0000 | |
| 22 | S | H | -0.5367 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -1.6017 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -1.0682 | |
| 27 | G | H | -0.8418 | |
| 28 | Y | H | -0.2456 | |
| 29 | T | H | -0.1438 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | -0.5595 | |
| 36 | S | H | -0.1043 | |
| 37 | Y | H | 0.3716 | |
| 38 | T | H | 0.0614 | |
| 39 | M | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | L | H | 0.0000 | |
| 43 | K | H | 0.0000 | |
| 44 | Q | H | -0.9134 | |
| 45 | R | H | -1.5552 | |
| 46 | P | H | -1.1002 | |
| 47 | G | H | -1.3570 | |
| 48 | Q | H | -1.9640 | |
| 49 | G | H | -1.3190 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -1.1054 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | Y | H | 0.1882 | |
| 56 | I | H | 0.0000 | |
| 57 | N | H | -0.0555 | |
| 58 | P | H | 0.0000 | |
| 59 | S | H | -0.5424 | |
| 62 | S | H | -0.1528 | |
| 63 | G | H | -0.2558 | |
| 64 | Y | H | 0.8809 | |
| 65 | T | H | 0.3529 | |
| 66 | D | H | -0.1358 | |
| 67 | Y | H | -0.9581 | |
| 68 | N | H | 0.0000 | |
| 69 | Q | H | -2.7722 | |
| 70 | K | H | -2.9741 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -2.9759 | |
| 74 | D | H | -3.0619 | |
| 75 | K | H | -2.0564 | |
| 76 | T | H | 0.0000 | |
| 77 | T | H | -0.7738 | |
| 78 | L | H | 0.0000 | |
| 79 | T | H | -0.2612 | |
| 80 | A | H | -0.8944 | |
| 81 | D | H | -1.6035 | |
| 82 | K | H | -2.0482 | |
| 83 | S | H | -1.2036 | |
| 84 | S | H | -1.0174 | |
| 85 | S | H | -1.1792 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.1188 | |
| 89 | M | H | 0.0000 | |
| 90 | Q | H | -0.8193 | |
| 91 | L | H | 0.0000 | |
| 92 | N | H | -1.2176 | |
| 93 | S | H | -1.1636 | |
| 94 | L | H | 0.0000 | |
| 95 | T | H | -1.3837 | |
| 96 | S | H | -1.5071 | |
| 97 | E | H | -2.0341 | |
| 98 | D | H | 0.0000 | |
| 99 | S | H | -0.6781 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.0502 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | T | H | 0.0000 | |
| 106 | R | H | 0.0401 | |
| 107 | G | H | 0.4803 | |
| 108 | T | H | 1.1798 | |
| 109 | L | H | 2.2946 | |
| 114 | L | H | 2.2131 | |
| 115 | G | H | 0.9281 | |
| 116 | L | H | 0.5805 | |
| 117 | S | H | -0.3684 | |
| 118 | W | H | -0.6903 | |
| 119 | G | H | -1.3358 | |
| 120 | Q | H | -1.8178 | |
| 121 | G | H | -0.7199 | |
| 122 | T | H | 0.0000 | |
| 123 | T | H | -0.0209 | |
| 124 | L | H | 0.0000 | |
| 125 | T | H | -0.1395 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.6936 | |
| 128 | S | H | -0.8848 | |
| 1 | D | L | -2.3696 | |
| 2 | I | L | 0.0000 | |
| 3 | K | L | -2.7259 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -1.4305 | |
| 6 | Q | L | -1.0999 | |
| 7 | S | L | -0.7206 | |
| 8 | P | L | -0.5778 | |
| 9 | S | L | -0.8017 | |
| 10 | S | L | -1.0924 | |
| 11 | L | L | -0.6509 | |
| 12 | S | L | -0.8974 | |
| 13 | A | L | 0.0000 | |
| 14 | S | L | -0.6264 | |
| 15 | L | L | -0.0717 | |
| 16 | G | L | -1.0400 | |
| 17 | E | L | -1.6939 | |
| 18 | R | L | -2.2452 | |
| 19 | V | L | 0.0000 | |
| 20 | S | L | -0.6815 | |
| 21 | L | L | 0.0000 | |
| 22 | T | L | -0.8829 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.9595 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -2.4605 | |
| 27 | Q | L | -3.0113 | |
| 28 | E | L | -2.6594 | |
| 29 | I | L | 0.0000 | |
| 36 | S | L | -0.7021 | |
| 37 | G | L | -0.0615 | |
| 38 | Y | L | 1.1419 | |
| 39 | L | L | 0.0000 | |
| 40 | S | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | L | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.6751 | |
| 46 | P | L | -1.4412 | |
| 47 | D | L | -2.2866 | |
| 48 | G | L | -1.5621 | |
| 49 | T | L | -1.3838 | |
| 50 | I | L | 0.0000 | |
| 51 | K | L | -1.0050 | |
| 52 | R | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | 0.9568 | |
| 56 | A | L | 0.7273 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -0.2583 | |
| 66 | T | L | 0.2341 | |
| 67 | L | L | 0.1841 | |
| 68 | D | L | 0.0738 | |
| 69 | S | L | -0.1733 | |
| 70 | G | L | -0.6928 | |
| 71 | V | L | -0.6108 | |
| 72 | P | L | -0.9117 | |
| 74 | K | L | -1.7111 | |
| 75 | R | L | 0.0000 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.4895 | |
| 78 | G | L | -0.4470 | |
| 79 | S | L | -1.0049 | |
| 80 | R | L | -1.8846 | |
| 83 | S | L | -1.3969 | |
| 84 | G | L | -1.4906 | |
| 85 | S | L | -2.0157 | |
| 86 | D | L | -1.7542 | |
| 87 | Y | L | 0.0000 | |
| 88 | S | L | -0.9142 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.6073 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.4620 | |
| 93 | S | L | -1.4389 | |
| 94 | L | L | 0.0000 | |
| 95 | E | L | -1.4702 | |
| 96 | S | L | -1.0995 | |
| 97 | E | L | -2.1760 | |
| 98 | D | L | 0.0000 | |
| 99 | F | L | 0.0000 | |
| 100 | A | L | 0.0000 | |
| 101 | D | L | -1.2017 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | L | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | Y | L | 0.7699 | |
| 108 | A | L | 0.1730 | |
| 109 | S | L | -0.1790 | |
| 114 | Y | L | 0.1542 | |
| 115 | P | L | -0.6805 | |
| 116 | Y | L | -0.0720 | |
| 117 | T | L | -0.6179 | |
| 118 | F | L | -0.3786 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -1.0627 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | R | L | -1.8592 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -1.5967 | |
| 126 | I | L | 0.3611 | |
| 127 | K | L | -1.0027 |