Project name: 2510-2

Status: done

Started: 2026-03-11 08:39:43
Settings
Chain sequence(s) H: QVQLQQSAAEVARPGASVKMSCKASGYTFTSYTMHWLKQRPGQGLEWIGYINPSSGYTDYNQKFKDKTTLTADKSSSTAYMQLNSLTSEDSAVYYCTRGTLLGLSWGQGTTLTVSS
L: DIKMTQSPSSLSASLGERVSLTCRASQEISGYLSWLQQKPDGTIKRLIYAASTLDSGVPKRFSGSRSGSDYSLTISSLESEDFADYYCLQYASYPYTFGGGTRLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:28)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:30)
Show buried residues

Minimal score value
-3.0619
Maximal score value
2.2946
Average score
-0.578
Total score value
-128.8984

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.2741
2 V H -0.5184
3 Q H -1.8413
4 L H 0.0000
5 Q H -2.1211
6 Q H 0.0000
7 S H -0.7993
8 A H -0.4656
9 A H 0.0464
11 E H -0.1714
12 V H 0.9076
13 A H -0.4993
14 R H -1.9284
15 P H -1.5927
16 G H -1.2608
17 A H -1.0610
18 S H -1.0952
19 V H 0.0000
20 K H -1.2135
21 M H 0.0000
22 S H -0.5367
23 C H 0.0000
24 K H -1.6017
25 A H 0.0000
26 S H -1.0682
27 G H -0.8418
28 Y H -0.2456
29 T H -0.1438
30 F H 0.0000
35 T H -0.5595
36 S H -0.1043
37 Y H 0.3716
38 T H 0.0614
39 M H 0.0000
40 H H 0.0000
41 W H 0.0000
42 L H 0.0000
43 K H 0.0000
44 Q H -0.9134
45 R H -1.5552
46 P H -1.1002
47 G H -1.3570
48 Q H -1.9640
49 G H -1.3190
50 L H 0.0000
51 E H -1.1054
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 Y H 0.1882
56 I H 0.0000
57 N H -0.0555
58 P H 0.0000
59 S H -0.5424
62 S H -0.1528
63 G H -0.2558
64 Y H 0.8809
65 T H 0.3529
66 D H -0.1358
67 Y H -0.9581
68 N H 0.0000
69 Q H -2.7722
70 K H -2.9741
71 F H 0.0000
72 K H -2.9759
74 D H -3.0619
75 K H -2.0564
76 T H 0.0000
77 T H -0.7738
78 L H 0.0000
79 T H -0.2612
80 A H -0.8944
81 D H -1.6035
82 K H -2.0482
83 S H -1.2036
84 S H -1.0174
85 S H -1.1792
86 T H 0.0000
87 A H 0.0000
88 Y H -0.1188
89 M H 0.0000
90 Q H -0.8193
91 L H 0.0000
92 N H -1.2176
93 S H -1.1636
94 L H 0.0000
95 T H -1.3837
96 S H -1.5071
97 E H -2.0341
98 D H 0.0000
99 S H -0.6781
100 A H 0.0000
101 V H 0.0502
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 T H 0.0000
106 R H 0.0401
107 G H 0.4803
108 T H 1.1798
109 L H 2.2946
114 L H 2.2131
115 G H 0.9281
116 L H 0.5805
117 S H -0.3684
118 W H -0.6903
119 G H -1.3358
120 Q H -1.8178
121 G H -0.7199
122 T H 0.0000
123 T H -0.0209
124 L H 0.0000
125 T H -0.1395
126 V H 0.0000
127 S H -0.6936
128 S H -0.8848
1 D L -2.3696
2 I L 0.0000
3 K L -2.7259
4 M L 0.0000
5 T L -1.4305
6 Q L -1.0999
7 S L -0.7206
8 P L -0.5778
9 S L -0.8017
10 S L -1.0924
11 L L -0.6509
12 S L -0.8974
13 A L 0.0000
14 S L -0.6264
15 L L -0.0717
16 G L -1.0400
17 E L -1.6939
18 R L -2.2452
19 V L 0.0000
20 S L -0.6815
21 L L 0.0000
22 T L -0.8829
23 C L 0.0000
24 R L -2.9595
25 A L 0.0000
26 S L -2.4605
27 Q L -3.0113
28 E L -2.6594
29 I L 0.0000
36 S L -0.7021
37 G L -0.0615
38 Y L 1.1419
39 L L 0.0000
40 S L 0.0000
41 W L 0.0000
42 L L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.6751
46 P L -1.4412
47 D L -2.2866
48 G L -1.5621
49 T L -1.3838
50 I L 0.0000
51 K L -1.0050
52 R L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.9568
56 A L 0.7273
57 A L 0.0000
65 S L -0.2583
66 T L 0.2341
67 L L 0.1841
68 D L 0.0738
69 S L -0.1733
70 G L -0.6928
71 V L -0.6108
72 P L -0.9117
74 K L -1.7111
75 R L 0.0000
76 F L 0.0000
77 S L -0.4895
78 G L -0.4470
79 S L -1.0049
80 R L -1.8846
83 S L -1.3969
84 G L -1.4906
85 S L -2.0157
86 D L -1.7542
87 Y L 0.0000
88 S L -0.9142
89 L L 0.0000
90 T L -0.6073
91 I L 0.0000
92 S L -1.4620
93 S L -1.4389
94 L L 0.0000
95 E L -1.4702
96 S L -1.0995
97 E L -2.1760
98 D L 0.0000
99 F L 0.0000
100 A L 0.0000
101 D L -1.2017
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 L L 0.0000
106 Q L 0.0000
107 Y L 0.7699
108 A L 0.1730
109 S L -0.1790
114 Y L 0.1542
115 P L -0.6805
116 Y L -0.0720
117 T L -0.6179
118 F L -0.3786
119 G L 0.0000
120 G L -1.0627
121 G L 0.0000
122 T L 0.0000
123 R L -1.8592
124 L L 0.0000
125 E L -1.5967
126 I L 0.3611
127 K L -1.0027
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Laboratory of Theory of Biopolymers 2018