Project name: ed4413a8de8031

Status: done

Started: 2026-06-22 13:16:33
Settings
Chain sequence(s) A: MSHHHHHHSGSAEEEKKKYLEEALEVVKEMRKLYEAGKPWEEMLALMPKLLIALRKAFPERKRIVIHHNRNEPEEFIERLEKFIEELMKNS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:41)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:42)
Show buried residues

Minimal score value
-4.5016
Maximal score value
1.3463
Average score
-2.0496
Total score value
-186.5144

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.5531
2 S A -0.6084
3 H A -1.7320
4 H A -2.3403
5 H A -2.7248
6 H A -2.7781
7 H A -2.5578
8 H A -2.3437
9 S A -2.0022
10 G A -2.4604
11 S A -2.5073
12 A A -2.7219
13 E A -3.9253
14 E A -4.3714
15 E A -4.3717
16 K A -4.0494
17 K A -4.1574
18 K A -4.5016
19 Y A -3.4492
20 L A 0.0000
21 E A -3.9593
22 E A -3.8597
23 A A 0.0000
24 L A -2.6335
25 E A -3.3996
26 V A 0.0000
27 V A 0.0000
28 K A -2.7415
29 E A -2.7216
30 M A 0.0000
31 R A -2.8961
32 K A -3.0835
33 L A -2.2247
34 Y A -2.2141
35 E A -2.8838
36 A A -1.7397
37 G A -1.6948
38 K A -2.3950
39 P A -1.5866
40 W A -1.9159
41 E A -2.3737
42 E A -2.0412
43 M A 0.0000
44 L A -1.0438
45 A A -0.8061
46 L A -0.8183
47 M A 0.0000
48 P A -0.2294
49 K A -1.3088
50 L A 0.0000
51 L A 0.5354
52 I A 0.4683
53 A A 0.0000
54 L A 0.0000
55 R A -2.7113
56 K A -2.4731
57 A A 0.0000
58 F A 0.0000
59 P A -2.9219
60 E A -3.5118
61 R A -3.7659
62 K A -3.7832
63 R A -2.8686
64 I A -0.2618
65 V A 1.3463
66 I A 0.2979
67 H A -1.4735
68 H A -2.2657
69 N A -3.7045
70 R A -4.1400
71 N A -3.6474
72 E A -4.0015
73 P A -3.4589
74 E A -3.8511
75 E A -3.9168
76 F A 0.0000
77 I A 0.0000
78 E A -3.0220
79 R A -3.3609
80 L A 0.0000
81 E A -2.5391
82 K A -2.9037
83 F A -1.3257
84 I A 0.0000
85 E A -3.1005
86 E A -3.2601
87 L A -2.1161
88 M A -2.8704
89 K A -3.2192
90 N A -2.6728
91 S A -2.3943
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018