Project name: af3_design4

Status: done

Started: 2025-07-26 20:35:57
Settings
Chain sequence(s) A: QVQLVESGGGLVQPGGSLRLSCAASSPQWQKSKFLAGLWFRQAPGQGLEAVASYGENKETGLGSISRDPRFTISRDNSKNTLYLQMNSLRAEDTAVYYCALGPRLMEDKEQFQLATHWGQGTLVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:59)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:00)
Show buried residues

Minimal score value
-3.7382
Maximal score value
1.7513
Average score
-0.7512
Total score value
-96.1599

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.4541
2 V A -1.0989
3 Q A -1.2608
4 L A 0.0000
5 V A 0.7057
6 E A 0.0000
7 S A -0.1485
8 G A -0.5728
9 G A 0.1552
10 G A 0.8159
11 L A 1.3010
12 V A 0.0000
13 Q A -1.4222
14 P A -1.6690
15 G A -1.4632
16 G A -1.0221
17 S A -1.3505
18 L A -1.0391
19 R A -2.0574
20 L A 0.0000
21 S A -0.4647
22 C A 0.0000
23 A A -0.2599
24 A A -0.5264
25 S A -0.6819
26 S A -1.1313
27 P A -1.8155
28 Q A -1.7031
29 W A 0.0000
30 Q A -2.8231
31 K A -2.6919
32 S A -1.6738
33 K A -1.6227
34 F A 0.3635
35 L A -0.1829
36 A A 0.0000
37 G A 0.0000
38 L A 0.0000
39 W A 0.0000
40 F A 0.0000
41 R A -0.1985
42 Q A -0.5493
43 A A -0.9437
44 P A -1.1759
45 G A -1.2316
46 Q A -1.7234
47 G A -0.9772
48 L A 0.1121
49 E A -0.6492
50 A A -0.8279
51 V A 0.0000
52 A A 0.0000
53 S A 0.0000
54 Y A 0.2609
55 G A 0.0000
56 E A -1.1517
57 N A -1.9830
58 K A -2.9853
59 E A -2.7525
60 T A -1.4297
61 G A -1.1393
62 L A -0.1067
63 G A -0.1035
64 S A 0.3716
65 I A 0.2119
66 S A -0.6677
67 R A -1.9225
68 D A -1.2751
69 P A -0.9586
70 R A -1.1202
71 F A 0.0000
72 T A -0.7116
73 I A 0.0000
74 S A -0.4007
75 R A -1.1724
76 D A -2.0450
77 N A -2.6263
78 S A -2.0620
79 K A -2.5052
80 N A -2.1340
81 T A 0.0000
82 L A 0.0000
83 Y A -0.6170
84 L A 0.0000
85 Q A -1.2562
86 M A 0.0000
87 N A -1.4997
88 S A -1.2398
89 L A 0.0000
90 R A -2.3853
91 A A -1.7690
92 E A -2.2747
93 D A 0.0000
94 T A -0.4456
95 A A 0.0000
96 V A 0.8976
97 Y A 0.0000
98 Y A 0.4277
99 C A 0.0000
100 A A 0.0000
101 L A 0.0000
102 G A 0.0000
103 P A 0.2207
104 R A -0.6406
105 L A 0.0000
106 M A -2.0988
107 E A -3.1569
108 D A -3.7105
109 K A -3.7382
110 E A -3.5451
111 Q A 0.0000
112 F A -1.3142
113 Q A -1.7420
114 L A -0.6916
115 A A -0.2374
116 T A -0.0671
117 H A -0.3517
118 W A 0.1409
119 G A -0.2136
120 Q A -0.8429
121 G A 0.0000
122 T A 0.6312
123 L A 1.7513
124 V A 0.0000
125 T A 0.3288
126 V A 0.0000
127 S A -0.7816
128 S A -0.5709
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018