Project name: query_structure

Status: done

Started: 2026-03-16 22:57:29
Settings
Chain sequence(s) A: CAVTHEKCSDDYDCCGSLCCVGICAKTIAPCK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:07)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:07)
Show buried residues

Minimal score value
-2.1052
Maximal score value
1.6118
Average score
-0.3404
Total score value
-10.8933

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 C A 0.8205
2 A A 0.1855
3 V A 0.9112
4 T A -0.4330
5 H A -1.4378
6 E A -1.8651
7 K A -2.1052
8 C A -0.9824
9 S A -1.0699
10 D A -1.3015
11 D A -0.6971
12 Y A 0.2072
13 D A -0.2024
14 C A 0.0000
15 C A 0.6418
16 G A -0.3583
17 S A -0.9701
18 L A -0.5045
19 C A 0.0000
20 C A -0.1712
21 V A 0.9876
22 G A -0.1912
23 I A -0.6626
24 C A 0.0000
25 A A -0.5178
26 K A -1.0790
27 T A 0.4796
28 I A 1.6118
29 A A 0.4848
30 P A -0.5426
31 C A -0.5717
32 K A -1.5599
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018