Project name: ECD_30_1st

Status: done

Started: 2024-06-19 14:44:37
Settings
Chain sequence(s) A: NFTLPPNFGKRPTDLELSVKLVEMLETIMFRSGCTLEESKIKEVKAKPKYVDLALEAQFSIMPKTALELAKVFRLKNIEALAILVCGCSPTGNLSNLFSLKVKGDPNLSWVMTTCSTECANEHMVDLLTKYSRGIYDGDLKDKVPYKGIKISLELVNKPCTEGIELKSKRPQLLRKKVKELEEKVEELSKEVTELSKENVGKSIMFAMTPKILKTSSLMPKLGYEKGLEISEKACLNGRCRRTVSLETGCRNVQLCSTILNVAFPPEVIGPLFFFPLLYMENQTAEGEKIVKEIKEEEKKKE
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:06:02)
[INFO]       Main:     Simulation completed successfully.                                          (00:06:03)
Show buried residues

Minimal score value
-5.1305
Maximal score value
2.4441
Average score
-1.1606
Total score value
-350.4921

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 N A -0.5270
2 F A 0.9163
3 T A 0.4951
4 L A 0.1974
5 P A -0.4406
6 P A -1.0699
7 N A -2.2547
8 F A 0.0000
9 G A -1.5015
10 K A -2.3954
11 R A -1.5673
12 P A -0.7334
13 T A -0.7905
14 D A -0.7782
15 L A 0.5874
16 E A -0.5451
17 L A 0.0000
18 S A 0.5616
19 V A 0.7290
20 K A -0.3486
21 L A 0.0000
22 V A -0.0522
23 E A -0.7685
24 M A -0.8730
25 L A 0.0000
26 E A -1.3591
27 T A 0.0000
28 I A -0.4979
29 M A 0.0000
30 F A -0.8745
31 R A -1.2726
32 S A -0.2344
33 G A 0.0000
34 C A 0.0000
35 T A -0.6651
36 L A 0.0000
37 E A -2.1199
38 E A -2.2923
39 S A -2.2201
40 K A -2.6144
41 I A -2.3441
42 K A -3.4570
43 E A -3.3583
44 V A -2.1262
45 K A -2.3810
46 A A -1.8819
47 K A -2.1535
48 P A -1.4466
49 K A -1.4135
50 Y A -0.9655
51 V A -1.0695
52 D A -2.1781
53 L A 0.0000
54 A A 0.0000
55 L A -0.5709
56 E A -1.2921
57 A A 0.0000
58 Q A 0.0000
59 F A -0.2685
60 S A -0.5495
61 I A 0.0000
62 M A 0.0000
63 P A 0.0000
64 K A -1.4184
65 T A 0.0000
66 A A 0.0000
67 L A -1.0399
68 E A -1.9824
69 L A 0.0000
70 A A 0.0000
71 K A -2.1661
72 V A 0.0517
73 F A -1.1984
74 R A -2.5709
75 L A -1.9464
76 K A -2.6357
77 N A -2.1796
78 I A -0.5163
79 E A 0.0000
80 A A 0.0000
81 L A 0.0000
82 A A 0.0000
83 I A 0.0000
84 L A 0.0000
85 V A 0.0000
86 C A 0.0000
87 G A 0.0000
88 C A 0.0000
89 S A 0.0000
90 P A 0.0000
91 T A 0.0000
92 G A 0.0000
93 N A -0.0037
94 L A 0.3928
95 S A 0.0000
96 N A 0.0000
97 L A 1.2075
98 F A 0.0000
99 S A 0.0000
100 L A 0.6593
101 K A -0.9369
102 V A 0.0000
103 K A -2.2030
104 G A 0.0000
105 D A -1.5547
106 P A -0.4669
107 N A -0.9956
108 L A 0.0000
109 S A 0.0000
110 W A -0.1957
111 V A 0.0000
112 M A 0.0000
113 T A 0.0000
114 T A -0.2057
115 C A 0.0000
116 S A 0.0000
117 T A -0.8971
118 E A -1.5901
119 C A -1.0613
120 A A 0.0000
121 N A -2.3501
122 E A -2.8349
123 H A -2.0076
124 M A 0.0000
125 V A -1.7970
126 D A -2.3641
127 L A 0.0000
128 L A 0.0000
129 T A -1.9654
130 K A -2.2565
131 Y A -1.4622
132 S A 0.0000
133 R A -2.8576
134 G A -1.9189
135 I A -1.3200
136 Y A -1.9719
137 D A -2.7504
138 G A -2.6722
139 D A -3.6364
140 L A 0.0000
141 K A -3.4077
142 D A -3.3806
143 K A -2.4895
144 V A 0.0000
145 P A -1.4898
146 Y A -1.6570
147 K A -1.8882
148 G A -0.7815
149 I A 0.0000
150 K A -2.3504
151 I A -0.6322
152 S A 0.0000
153 L A 0.0000
154 E A -2.5146
155 L A -1.4678
156 V A 0.0000
157 N A -2.5530
158 K A -2.9760
159 P A -2.1580
160 C A -1.6461
161 T A -1.8561
162 E A -2.8393
163 G A 0.0000
164 I A -1.5523
165 E A -3.0055
166 L A -2.3484
167 K A -2.2617
168 S A -2.5195
169 K A -3.2215
170 R A -3.2300
171 P A -2.3839
172 Q A -2.3896
173 L A -1.6706
174 L A -2.3471
175 R A -3.3522
176 K A -3.6136
177 K A -3.0189
178 V A -3.0200
179 K A -4.5335
180 E A -4.5223
181 L A 0.0000
182 E A -3.9212
183 E A -4.6684
184 K A -3.8430
185 V A -3.4425
186 E A -4.2060
187 E A -4.2201
188 L A 0.0000
189 S A -2.8328
190 K A -3.4898
191 E A -3.1648
192 V A 0.0000
193 T A -2.3384
194 E A -3.5392
195 L A -2.6847
196 S A -2.2346
197 K A -3.5343
198 E A -3.3842
199 N A 0.0000
200 V A 0.0000
201 G A -2.1556
202 K A -1.4341
203 S A 0.4332
204 I A 1.0030
205 M A 1.7544
206 F A 2.4441
207 A A 0.0000
208 M A 0.0000
209 T A 0.4126
210 P A -0.4582
211 K A -1.2843
212 I A 0.0000
213 L A -0.2724
214 K A -1.5801
215 T A 0.0000
216 S A 0.0000
217 S A -0.8748
218 L A -0.3370
219 M A 0.0000
220 P A 0.0000
221 K A -1.2396
222 L A -0.7057
223 G A 0.0000
224 Y A 0.0000
225 E A -2.3886
226 K A -1.9305
227 G A 0.0000
228 L A -1.8787
229 E A -2.7785
230 I A -1.9095
231 S A 0.0000
232 E A -2.5070
233 K A -2.3316
234 A A -1.2534
235 C A -0.7829
236 L A 0.0000
237 N A -2.3052
238 G A -2.5245
239 R A -3.3130
240 C A 0.0000
241 R A -2.2624
242 R A -1.6183
243 T A 0.0000
244 V A 0.0000
245 S A 0.0000
246 L A 0.0000
247 E A 0.0000
248 T A 0.0000
249 G A 0.0000
250 C A 0.0000
251 R A 0.0000
252 N A 0.0000
253 V A 0.0000
254 Q A -0.1170
255 L A 0.0000
256 C A 0.0000
257 S A 0.0000
258 T A 0.0000
259 I A 0.0000
260 L A 0.0000
261 N A 0.4503
262 V A 1.2586
263 A A -0.0070
264 F A 0.0000
265 P A -0.2078
266 P A -0.9181
267 E A -1.4637
268 V A 0.5495
269 I A 0.0000
270 G A 0.0000
271 P A 0.0000
272 L A 0.0000
273 F A 0.0000
274 F A 0.0000
275 F A 0.0000
276 P A 0.0000
277 L A 0.2244
278 L A 0.0700
279 Y A 0.0000
280 M A -0.3650
281 E A -1.6530
282 N A -1.3624
283 Q A 0.0000
284 T A -1.3448
285 A A -1.7390
286 E A -2.1653
287 G A 0.0000
288 E A -3.1947
289 K A -3.3453
290 I A -2.5299
291 V A 0.0000
292 K A -4.2590
293 E A -4.2196
294 I A -3.4038
295 K A -4.2621
296 E A -5.1305
297 E A -5.0949
298 E A -4.4572
299 K A -5.0769
300 K A -5.0543
301 K A -4.6339
302 E A -3.9944
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Laboratory of Theory of Biopolymers 2018