| Chain sequence(s) |
A: QVQLVQSGPELKKPGASVKVSCKASGYTFTEYVMHWVRQAPGQGLEWIGYFLPFNDLTKYNEKFRGRVTLTSDTSSSTAFMELSRLTSEDTAVYYCARYDYDGFFDVWGQGTTVTVSSGGGGSGGGGSGGGGSDIQMTQSPSSLSASVGDRVTISCRASQDISKYLNWYQQKPGKAPKLLIYHTSRLHSGVPSRFSGSGSGTDFTLTISNLQPEDIATYFCQQGNTRTYTFGGGTKVEIK
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:36)
[INFO] Main: Simulation completed successfully. (00:02:37)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.4249 | |
| 2 | V | A | -0.8887 | |
| 3 | Q | A | -1.1406 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.1206 | |
| 6 | Q | A | 0.0000 | |
| 7 | S | A | -0.6603 | |
| 8 | G | A | -0.6813 | |
| 9 | P | A | -0.4483 | |
| 10 | E | A | -0.4820 | |
| 11 | L | A | 0.4891 | |
| 12 | K | A | -0.9084 | |
| 13 | K | A | -2.1420 | |
| 14 | P | A | -1.7321 | |
| 15 | G | A | -1.5750 | |
| 16 | A | A | -1.4042 | |
| 17 | S | A | -1.6693 | |
| 18 | V | A | 0.0000 | |
| 19 | K | A | -2.0488 | |
| 20 | V | A | 0.0000 | |
| 21 | S | A | -0.6058 | |
| 22 | C | A | 0.0000 | |
| 23 | K | A | -1.0627 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.8615 | |
| 26 | G | A | -0.9311 | |
| 27 | Y | A | -0.5574 | |
| 28 | T | A | -0.5747 | |
| 29 | F | A | 0.0000 | |
| 30 | T | A | -0.5155 | |
| 31 | E | A | -1.0687 | |
| 32 | Y | A | -0.0055 | |
| 33 | V | A | 0.5714 | |
| 34 | M | A | 0.0000 | |
| 35 | H | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | V | A | 0.0000 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -0.6733 | |
| 40 | A | A | -1.0489 | |
| 41 | P | A | -0.8728 | |
| 42 | G | A | -1.2803 | |
| 43 | Q | A | -1.7882 | |
| 44 | G | A | -1.1797 | |
| 45 | L | A | 0.0000 | |
| 46 | E | A | -1.0667 | |
| 47 | W | A | 0.0000 | |
| 48 | I | A | 0.0000 | |
| 49 | G | A | 0.0000 | |
| 50 | Y | A | 0.0000 | |
| 51 | F | A | 0.0000 | |
| 52 | L | A | -0.0795 | |
| 53 | P | A | 0.0000 | |
| 54 | F | A | 0.6900 | |
| 55 | N | A | -0.8242 | |
| 56 | D | A | -1.3153 | |
| 57 | L | A | -0.0332 | |
| 58 | T | A | -0.3771 | |
| 59 | K | A | -1.1087 | |
| 60 | Y | A | -1.6781 | |
| 61 | N | A | 0.0000 | |
| 62 | E | A | -3.6154 | |
| 63 | K | A | -3.5239 | |
| 64 | F | A | 0.0000 | |
| 65 | R | A | -3.4625 | |
| 66 | G | A | -2.3304 | |
| 67 | R | A | -2.1426 | |
| 68 | V | A | 0.0000 | |
| 69 | T | A | -0.9780 | |
| 70 | L | A | 0.0000 | |
| 71 | T | A | -0.4215 | |
| 72 | S | A | -0.6374 | |
| 73 | D | A | -1.1018 | |
| 74 | T | A | -0.3685 | |
| 75 | S | A | -0.6209 | |
| 76 | S | A | -0.8314 | |
| 77 | S | A | -0.8159 | |
| 78 | T | A | -0.7658 | |
| 79 | A | A | 0.0000 | |
| 80 | F | A | -0.6168 | |
| 81 | M | A | 0.0000 | |
| 82 | E | A | -1.4470 | |
| 83 | L | A | 0.0000 | |
| 84 | S | A | -1.7660 | |
| 85 | R | A | -2.3966 | |
| 86 | L | A | 0.0000 | |
| 87 | T | A | -1.6861 | |
| 88 | S | A | -1.7076 | |
| 89 | E | A | -2.1945 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.6523 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | 0.0230 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | 0.0000 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | R | A | 0.0000 | |
| 99 | Y | A | 0.1059 | |
| 100 | D | A | -0.1143 | |
| 101 | Y | A | 0.5568 | |
| 102 | D | A | -0.4573 | |
| 103 | G | A | 0.0000 | |
| 104 | F | A | 0.0000 | |
| 105 | F | A | 0.0000 | |
| 106 | D | A | -0.5373 | |
| 107 | V | A | -0.3282 | |
| 108 | W | A | -0.4571 | |
| 109 | G | A | 0.0000 | |
| 110 | Q | A | -1.2927 | |
| 111 | G | A | -0.7281 | |
| 112 | T | A | 0.0000 | |
| 113 | T | A | -0.1605 | |
| 114 | V | A | 0.0000 | |
| 115 | T | A | -0.3528 | |
| 116 | V | A | 0.0000 | |
| 117 | S | A | -1.1588 | |
| 118 | S | A | -1.3372 | |
| 119 | G | A | -1.1667 | |
| 120 | G | A | -1.1084 | |
| 121 | G | A | -1.1327 | |
| 122 | G | A | -1.0982 | |
| 123 | S | A | -0.9580 | |
| 124 | G | A | -1.3430 | |
| 125 | G | A | -1.4576 | |
| 126 | G | A | -1.4082 | |
| 127 | G | A | -1.3795 | |
| 128 | S | A | -1.0363 | |
| 129 | G | A | -1.3873 | |
| 130 | G | A | -1.7608 | |
| 131 | G | A | -1.1421 | |
| 132 | G | A | -1.7574 | |
| 133 | S | A | -0.9718 | |
| 134 | D | A | -1.7450 | |
| 135 | I | A | 0.0000 | |
| 136 | Q | A | -2.0319 | |
| 137 | M | A | 0.0000 | |
| 138 | T | A | -1.4553 | |
| 139 | Q | A | -0.9247 | |
| 140 | S | A | -0.9190 | |
| 141 | P | A | -0.6952 | |
| 142 | S | A | -0.9568 | |
| 143 | S | A | -1.2217 | |
| 144 | L | A | -0.9356 | |
| 145 | S | A | -1.1181 | |
| 146 | A | A | -1.0171 | |
| 147 | S | A | -0.7401 | |
| 148 | V | A | 0.2398 | |
| 149 | G | A | -0.8336 | |
| 150 | D | A | -1.7347 | |
| 151 | R | A | -2.4786 | |
| 152 | V | A | 0.0000 | |
| 153 | T | A | -0.6303 | |
| 154 | I | A | 0.0000 | |
| 155 | S | A | -1.0222 | |
| 156 | C | A | 0.0000 | |
| 157 | R | A | -3.2102 | |
| 158 | A | A | 0.0000 | |
| 159 | S | A | -2.2840 | |
| 160 | Q | A | -2.9823 | |
| 161 | D | A | -3.1819 | |
| 162 | I | A | 0.0000 | |
| 163 | S | A | -1.8149 | |
| 164 | K | A | -2.0431 | |
| 165 | Y | A | -0.8258 | |
| 166 | L | A | 0.0000 | |
| 167 | N | A | 0.0000 | |
| 168 | W | A | 0.0000 | |
| 169 | Y | A | 0.0000 | |
| 170 | Q | A | 0.0000 | |
| 171 | Q | A | 0.0000 | |
| 172 | K | A | -1.7101 | |
| 173 | P | A | -1.1566 | |
| 174 | G | A | -1.6442 | |
| 175 | K | A | -2.5369 | |
| 176 | A | A | -1.5638 | |
| 177 | P | A | 0.0000 | |
| 178 | K | A | -1.4350 | |
| 179 | L | A | 0.0000 | |
| 180 | L | A | 0.0000 | |
| 181 | I | A | 0.0000 | |
| 182 | Y | A | 0.0000 | |
| 183 | H | A | -1.2406 | |
| 184 | T | A | 0.0000 | |
| 185 | S | A | -1.4615 | |
| 186 | R | A | -1.9026 | |
| 187 | L | A | -0.8408 | |
| 188 | H | A | -0.8553 | |
| 189 | S | A | -0.6238 | |
| 190 | G | A | -0.5180 | |
| 191 | V | A | -0.3982 | |
| 192 | P | A | -0.3433 | |
| 193 | S | A | -0.4841 | |
| 194 | R | A | -0.9782 | |
| 195 | F | A | 0.0000 | |
| 196 | S | A | -0.6166 | |
| 197 | G | A | -0.6773 | |
| 198 | S | A | -1.1263 | |
| 199 | G | A | -1.4768 | |
| 200 | S | A | -1.8208 | |
| 201 | G | A | -2.1976 | |
| 202 | T | A | -2.7587 | |
| 203 | D | A | -3.0695 | |
| 204 | F | A | 0.0000 | |
| 205 | T | A | -0.9037 | |
| 206 | L | A | 0.0000 | |
| 207 | T | A | -0.7118 | |
| 208 | I | A | 0.0000 | |
| 209 | S | A | -1.7261 | |
| 210 | N | A | -1.7930 | |
| 211 | L | A | 0.0000 | |
| 212 | Q | A | -0.9364 | |
| 213 | P | A | -0.8932 | |
| 214 | E | A | -1.9871 | |
| 215 | D | A | 0.0000 | |
| 216 | I | A | -0.9193 | |
| 217 | A | A | 0.0000 | |
| 218 | T | A | -1.0686 | |
| 219 | Y | A | 0.0000 | |
| 220 | F | A | 0.0000 | |
| 221 | C | A | 0.0000 | |
| 222 | Q | A | 0.0000 | |
| 223 | Q | A | 0.0000 | |
| 224 | G | A | -0.9473 | |
| 225 | N | A | -1.6536 | |
| 226 | T | A | -1.3299 | |
| 227 | R | A | -2.1865 | |
| 228 | T | A | -1.4355 | |
| 229 | Y | A | 0.0000 | |
| 230 | T | A | -0.8242 | |
| 231 | F | A | -0.3535 | |
| 232 | G | A | 0.0000 | |
| 233 | G | A | -1.2639 | |
| 234 | G | A | 0.0000 | |
| 235 | T | A | 0.0000 | |
| 236 | K | A | -2.1338 | |
| 237 | V | A | 0.0000 | |
| 238 | E | A | -1.8034 | |
| 239 | I | A | -1.0049 | |
| 240 | K | A | -1.6134 |