Project name: n153-l94

Status: done

Started: 2026-06-19 05:17:25
Settings
Chain sequence(s) A: QVQLVQSGPELKKPGASVKVSCKASGYTFTEYVMHWVRQAPGQGLEWIGYFLPFNDLTKYNEKFRGRVTLTSDTSSSTAFMELSRLTSEDTAVYYCARYDYDGFFDVWGQGTTVTVSSGGGGSGGGGSGGGGSDIQMTQSPSSLSASVGDRVTISCRASQDISKYLNWYQQKPGKAPKLLIYHTSRLHSGVPSRFSGSGSGTDFTLTISNLQPEDIATYFCQQGNTRTYTFGGGTKVEIK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:36)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:37)
Show buried residues

Minimal score value
-3.6154
Maximal score value
0.69
Average score
-0.799
Total score value
-191.7612

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.4249
2 V A -0.8887
3 Q A -1.1406
4 L A 0.0000
5 V A 0.1206
6 Q A 0.0000
7 S A -0.6603
8 G A -0.6813
9 P A -0.4483
10 E A -0.4820
11 L A 0.4891
12 K A -0.9084
13 K A -2.1420
14 P A -1.7321
15 G A -1.5750
16 A A -1.4042
17 S A -1.6693
18 V A 0.0000
19 K A -2.0488
20 V A 0.0000
21 S A -0.6058
22 C A 0.0000
23 K A -1.0627
24 A A 0.0000
25 S A -0.8615
26 G A -0.9311
27 Y A -0.5574
28 T A -0.5747
29 F A 0.0000
30 T A -0.5155
31 E A -1.0687
32 Y A -0.0055
33 V A 0.5714
34 M A 0.0000
35 H A 0.0000
36 W A 0.0000
37 V A 0.0000
38 R A 0.0000
39 Q A -0.6733
40 A A -1.0489
41 P A -0.8728
42 G A -1.2803
43 Q A -1.7882
44 G A -1.1797
45 L A 0.0000
46 E A -1.0667
47 W A 0.0000
48 I A 0.0000
49 G A 0.0000
50 Y A 0.0000
51 F A 0.0000
52 L A -0.0795
53 P A 0.0000
54 F A 0.6900
55 N A -0.8242
56 D A -1.3153
57 L A -0.0332
58 T A -0.3771
59 K A -1.1087
60 Y A -1.6781
61 N A 0.0000
62 E A -3.6154
63 K A -3.5239
64 F A 0.0000
65 R A -3.4625
66 G A -2.3304
67 R A -2.1426
68 V A 0.0000
69 T A -0.9780
70 L A 0.0000
71 T A -0.4215
72 S A -0.6374
73 D A -1.1018
74 T A -0.3685
75 S A -0.6209
76 S A -0.8314
77 S A -0.8159
78 T A -0.7658
79 A A 0.0000
80 F A -0.6168
81 M A 0.0000
82 E A -1.4470
83 L A 0.0000
84 S A -1.7660
85 R A -2.3966
86 L A 0.0000
87 T A -1.6861
88 S A -1.7076
89 E A -2.1945
90 D A 0.0000
91 T A -0.6523
92 A A 0.0000
93 V A 0.0230
94 Y A 0.0000
95 Y A 0.0000
96 C A 0.0000
97 A A 0.0000
98 R A 0.0000
99 Y A 0.1059
100 D A -0.1143
101 Y A 0.5568
102 D A -0.4573
103 G A 0.0000
104 F A 0.0000
105 F A 0.0000
106 D A -0.5373
107 V A -0.3282
108 W A -0.4571
109 G A 0.0000
110 Q A -1.2927
111 G A -0.7281
112 T A 0.0000
113 T A -0.1605
114 V A 0.0000
115 T A -0.3528
116 V A 0.0000
117 S A -1.1588
118 S A -1.3372
119 G A -1.1667
120 G A -1.1084
121 G A -1.1327
122 G A -1.0982
123 S A -0.9580
124 G A -1.3430
125 G A -1.4576
126 G A -1.4082
127 G A -1.3795
128 S A -1.0363
129 G A -1.3873
130 G A -1.7608
131 G A -1.1421
132 G A -1.7574
133 S A -0.9718
134 D A -1.7450
135 I A 0.0000
136 Q A -2.0319
137 M A 0.0000
138 T A -1.4553
139 Q A -0.9247
140 S A -0.9190
141 P A -0.6952
142 S A -0.9568
143 S A -1.2217
144 L A -0.9356
145 S A -1.1181
146 A A -1.0171
147 S A -0.7401
148 V A 0.2398
149 G A -0.8336
150 D A -1.7347
151 R A -2.4786
152 V A 0.0000
153 T A -0.6303
154 I A 0.0000
155 S A -1.0222
156 C A 0.0000
157 R A -3.2102
158 A A 0.0000
159 S A -2.2840
160 Q A -2.9823
161 D A -3.1819
162 I A 0.0000
163 S A -1.8149
164 K A -2.0431
165 Y A -0.8258
166 L A 0.0000
167 N A 0.0000
168 W A 0.0000
169 Y A 0.0000
170 Q A 0.0000
171 Q A 0.0000
172 K A -1.7101
173 P A -1.1566
174 G A -1.6442
175 K A -2.5369
176 A A -1.5638
177 P A 0.0000
178 K A -1.4350
179 L A 0.0000
180 L A 0.0000
181 I A 0.0000
182 Y A 0.0000
183 H A -1.2406
184 T A 0.0000
185 S A -1.4615
186 R A -1.9026
187 L A -0.8408
188 H A -0.8553
189 S A -0.6238
190 G A -0.5180
191 V A -0.3982
192 P A -0.3433
193 S A -0.4841
194 R A -0.9782
195 F A 0.0000
196 S A -0.6166
197 G A -0.6773
198 S A -1.1263
199 G A -1.4768
200 S A -1.8208
201 G A -2.1976
202 T A -2.7587
203 D A -3.0695
204 F A 0.0000
205 T A -0.9037
206 L A 0.0000
207 T A -0.7118
208 I A 0.0000
209 S A -1.7261
210 N A -1.7930
211 L A 0.0000
212 Q A -0.9364
213 P A -0.8932
214 E A -1.9871
215 D A 0.0000
216 I A -0.9193
217 A A 0.0000
218 T A -1.0686
219 Y A 0.0000
220 F A 0.0000
221 C A 0.0000
222 Q A 0.0000
223 Q A 0.0000
224 G A -0.9473
225 N A -1.6536
226 T A -1.3299
227 R A -2.1865
228 T A -1.4355
229 Y A 0.0000
230 T A -0.8242
231 F A -0.3535
232 G A 0.0000
233 G A -1.2639
234 G A 0.0000
235 T A 0.0000
236 K A -2.1338
237 V A 0.0000
238 E A -1.8034
239 I A -1.0049
240 K A -1.6134
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018