| Chain sequence(s) |
A: HYTVNS
C: HYTVNS B: HYTVNS E: HYTVNS D: HYTVNS G: HYTVNS F: HYTVNS I: HYTVNS H: HYTVNS J: HYTVNS input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,J |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:12)
[INFO] Main: Simulation completed successfully. (00:00:14)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | H | E | -1.3894 | |
| 2 | Y | E | -0.6220 | |
| 3 | T | E | -0.7338 | |
| 4 | V | E | 0.0000 | |
| 5 | N | E | -1.2814 | |
| 6 | S | E | -0.9419 | |
| 1 | H | C | -1.4437 | |
| 2 | Y | C | -0.8516 | |
| 3 | T | C | -0.7449 | |
| 4 | V | C | 0.0000 | |
| 5 | N | C | -0.8277 | |
| 6 | S | C | -0.6244 | |
| 1 | H | A | -0.9549 | |
| 2 | Y | A | 0.0229 | |
| 3 | T | A | -0.0477 | |
| 4 | V | A | 0.1728 | |
| 5 | N | A | -1.1898 | |
| 6 | S | A | -0.8958 | |
| 1 | H | B | -0.5527 | |
| 2 | Y | B | 0.8607 | |
| 3 | T | B | 0.4286 | |
| 4 | V | B | 0.3841 | |
| 5 | N | B | -0.3528 | |
| 6 | S | B | -0.5135 | |
| 1 | H | D | -1.0575 | |
| 2 | Y | D | -0.1289 | |
| 3 | T | D | 0.0000 | |
| 4 | V | D | 0.0000 | |
| 5 | N | D | -0.0201 | |
| 6 | S | D | -0.1438 | |
| 1 | H | I | -1.0617 | |
| 2 | Y | I | -0.3063 | |
| 3 | T | I | -0.4573 | |
| 4 | V | I | -0.4623 | |
| 5 | N | I | -1.4967 | |
| 6 | S | I | -1.0069 | |
| 1 | H | G | -1.4409 | |
| 2 | Y | G | -0.9474 | |
| 3 | T | G | -0.9614 | |
| 4 | V | G | 0.0000 | |
| 5 | N | G | -1.0301 | |
| 6 | S | G | -0.8424 | |
| 1 | H | F | -1.0525 | |
| 2 | Y | F | 0.2295 | |
| 3 | T | F | 0.0000 | |
| 4 | V | F | 0.0000 | |
| 5 | N | F | 0.0000 | |
| 6 | S | F | -0.4306 | |
| 1 | H | H | -1.0267 | |
| 2 | Y | H | 0.1146 | |
| 3 | T | H | 0.1797 | |
| 4 | V | H | 0.0000 | |
| 5 | N | H | 0.2175 | |
| 6 | S | H | 0.0284 | |
| 1 | H | J | -0.5477 | |
| 2 | Y | J | 1.0947 | |
| 3 | T | J | 0.9162 | |
| 4 | V | J | 1.4583 | |
| 5 | N | J | 0.1147 | |
| 6 | S | J | -0.2496 |