Project name: query_structure

Status: done

Started: 2026-03-16 23:17:00
Settings
Chain sequence(s) A: GKVTHSIHIEKDTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMMEDFFSQPSVGLLVRTYPEL
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:24)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:25)
Show buried residues

Minimal score value
-3.3699
Maximal score value
0.8022
Average score
-1.196
Total score value
-102.8575

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
840 G A -0.8146
841 K A -1.4293
842 V A -0.5031
843 T A -0.7380
844 H A -1.1153
845 S A -0.9857
846 I A 0.0000
847 H A -1.6782
848 I A 0.0000
849 E A -2.8881
850 K A -2.5656
856 D A -2.1327
857 T A -1.2820
858 Y A 0.0000
859 G A 0.0000
860 F A -0.6055
861 S A -0.3405
862 L A -0.1034
863 S A -0.3001
864 S A -0.5902
865 V A -0.9842
866 E A -3.0438
867 E A -3.3699
868 D A -2.9954
869 G A -1.9879
870 I A -1.0153
871 R A -1.8036
872 R A -1.3068
873 L A 0.0000
874 Y A -0.0935
875 V A 0.0000
876 N A -1.2681
877 S A -1.2343
878 V A -1.6162
879 K A -2.6678
880 E A -2.9520
881 T A -1.7909
882 G A -1.6639
883 L A -1.7715
884 A A 0.0000
885 S A -2.3664
886 K A -2.9005
887 K A -2.5546
888 G A -1.7588
889 L A 0.0000
890 K A -1.6475
891 A A -0.9617
892 G A -0.8017
893 D A 0.0000
894 E A -0.5584
895 I A 0.0000
896 L A -0.8825
897 E A -1.5253
898 I A 0.0000
899 N A -1.3295
900 N A -1.9764
901 R A -2.1194
902 A A -1.5691
903 A A 0.0000
904 D A -2.2743
905 A A -1.2869
906 L A 0.0000
907 N A -1.8588
908 S A -1.5349
909 S A -1.5757
910 M A -1.3839
911 M A -1.5444
912 E A -2.7660
913 D A -2.5353
914 F A -1.3091
915 F A -0.9933
916 S A -1.7617
917 Q A -1.9377
918 P A -1.7779
919 S A -1.7584
920 V A 0.0000
921 G A -1.1981
922 L A 0.0000
923 L A -0.9033
924 V A 0.0000
925 R A -1.3576
926 T A 0.0000
927 Y A -0.0221
928 P A -0.4879
929 E A -0.8032
930 L A 0.8022
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Laboratory of Theory of Biopolymers 2018