Project name: ee1a1fb60db0886

Status: done

Started: 2025-06-03 05:27:40
Settings
Chain sequence(s) H: EVQLVESGGDLVQPGRSLRLSCVASGFTFDDYAMHWVRQAPGKGLEWVSGVSWSGSTVGYADSVKGRFTVSRDNAQKSLYLQMNSLRAEDTALYYCVKDAYKFNYYYYGLDVWGQGTTVTVSS
L: EIVMTQSPATLSVSPGERATLSCRASQTILSNLAWYLQKPGQAPRLLIYGASTRATGLPARFSGSGSGTEFTLTISSLQSEDFAVYYCQQYNNWPLTFGGGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:09)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:12)
Show buried residues

Minimal score value
-2.7257
Maximal score value
2.0666
Average score
-0.4827
Total score value
-111.0268

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -1.8051
2 V H -0.6520
3 Q H -0.5852
4 L H 0.0000
5 V H 1.0145
6 E H 0.0000
7 S H -0.5011
8 G H -1.2564
9 G H -1.0291
11 D H -1.3362
12 L H 0.5848
13 V H -0.5948
14 Q H -1.3945
15 P H -2.0945
16 G H -2.0926
17 R H -2.6755
18 S H -2.0230
19 L H -1.4453
20 R H -1.9241
21 L H 0.0000
22 S H -0.1262
23 C H 0.0000
24 V H 1.0923
25 A H 0.0000
26 S H -0.3490
27 G H -0.8740
28 F H -0.4475
29 T H -0.4300
30 F H 0.0000
35 D H -0.9129
36 D H 0.2283
37 Y H 0.7195
38 A H 0.0000
39 M H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.8245
45 A H -1.2052
46 P H -0.9619
47 G H -1.4563
48 K H -2.2688
49 G H -1.3949
50 L H 0.0000
51 E H -0.9307
52 W H 0.0000
53 V H 0.0000
54 S H 0.0000
55 G H 0.0000
56 V H 0.0000
57 S H 0.0000
58 W H 0.7547
59 S H -0.0805
62 G H -0.1977
63 S H -0.0490
64 T H 0.3870
65 V H 1.0795
66 G H 0.1865
67 Y H -0.6549
68 A H -1.6094
69 D H -2.7257
70 S H -1.7544
71 V H 0.0000
72 K H -2.6223
74 G H -1.7903
75 R H -1.6304
76 F H 0.0000
77 T H -0.9315
78 V H 0.0000
79 S H -0.3530
80 R H -1.0091
81 D H -1.5511
82 N H -1.5620
83 A H -1.2802
84 Q H -1.8206
85 K H -1.7227
86 S H 0.0000
87 L H 0.0000
88 Y H -0.3786
89 L H 0.0000
90 Q H -1.5081
91 M H 0.0000
92 N H -2.1784
93 S H -1.7760
94 L H 0.0000
95 R H -2.4859
96 A H -1.6256
97 E H -2.2325
98 D H 0.0000
99 T H -0.8020
100 A H 0.0000
101 L H 0.1075
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 V H 0.0000
106 K H 0.0000
107 D H 0.0000
108 A H 0.5232
109 Y H 1.0257
110 K H 0.5418
111 F H 1.8615
111A N H 1.2579
112B Y H 2.0666
112A Y H 1.3342
112 Y H 1.4059
113 Y H 0.9725
114 G H 0.0000
115 L H 0.0000
116 D H -0.4153
117 V H -0.2389
118 W H 0.0000
119 G H 0.0000
120 Q H -1.2845
121 G H -0.5126
122 T H 0.0000
123 T H -0.3731
124 V H 0.0000
125 T H -0.3599
126 V H 0.0000
127 S H -0.4761
128 S H -0.4778
1 E L -1.8761
2 I L 0.0000
3 V L 0.7434
4 M L 0.0000
5 T L -0.6562
6 Q L -0.6989
7 S L -0.6615
8 P L -0.3677
9 A L -0.2659
10 T L -0.3373
11 L L -0.0673
12 S L -0.2147
13 V L -0.5250
14 S L -0.9211
15 P L -1.2988
16 G L -1.6028
17 E L -2.2976
18 R L -2.3172
19 A L 0.0000
20 T L -0.6402
21 L L 0.0000
22 S L -0.8624
23 C L 0.0000
24 R L -2.2840
25 A L 0.0000
26 S L -0.8215
27 Q L -1.0988
28 T L -0.6034
29 I L 0.0000
36 L L 0.9751
37 S L 0.0879
38 N L 0.0085
39 L L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 L L -0.3170
44 Q L 0.0000
45 K L -1.2503
46 P L -1.0193
47 G L -1.4157
48 Q L -2.0115
49 A L -1.3024
50 P L 0.0000
51 R L -1.3249
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.1060
56 G L -0.0693
57 A L 0.0000
65 S L -0.6352
66 T L -0.6988
67 R L -1.2178
68 A L -0.7656
69 T L -0.5389
70 G L -0.5245
71 L L -0.2235
72 P L -0.3619
74 A L -0.3060
75 R L -0.7118
76 F L 0.0000
77 S L -0.5306
78 G L 0.0000
79 S L -0.6188
80 G L -0.8811
83 S L -0.5746
84 G L -0.4888
85 T L -1.3132
86 E L -1.9398
87 F L 0.0000
88 T L -0.7762
89 L L 0.0000
90 T L -0.5718
91 I L 0.0000
92 S L -1.2703
93 S L -1.5898
94 L L 0.0000
95 Q L -1.7937
96 S L -0.9962
97 E L -1.4830
98 D L 0.0000
99 F L -0.0737
100 A L 0.0000
101 V L -0.0084
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 Y L 0.0000
108 N L -0.5603
109 N L -1.4782
114 W L -0.6842
115 P L -1.0316
116 L L 0.0000
117 T L -0.2707
118 F L 0.0000
119 G L 0.0000
120 G L -0.7461
121 G L -0.6363
122 T L 0.0000
123 K L -0.3413
124 V L 0.0000
125 E L -0.0418
126 I L 0.8696
127 K L -0.8745
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018