Project name: Pep5-Mut7-KLVFF

Status: done

Started: 2026-02-11 05:58:41
Settings
Chain sequence(s) A: RGDGWKPFVIDATVLVALVTGIGHIKLVFF
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       runJob:   FoldX not utilized. Treating input pdb file as it was already optimized.    (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:01)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:02)
Show buried residues

Minimal score value
-1.9561
Maximal score value
2.6253
Average score
0.6824
Total score value
20.4707

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 R A -1.9318
2 G A -1.1518
3 D A -1.9561
4 G A -0.5575
5 W A 0.8051
6 K A -1.5398
7 P A -0.2190
8 F A 2.1530
9 V A 2.0861
10 I A 1.9101
11 D A -1.4034
12 A A -0.1338
13 T A 0.4812
14 V A 2.0544
15 L A 2.2369
16 V A 2.0860
17 A A 0.6874
18 L A 1.8874
19 V A 2.0511
20 T A 0.2632
21 G A 0.1827
22 I A 1.9190
23 G A -0.1413
24 H A -0.6814
25 I A 1.5148
26 K A -1.0328
27 L A 1.5576
28 V A 2.4258
29 F A 2.6253
30 F A 2.2923
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Laboratory of Theory of Biopolymers 2018