Project name: ee78bc433351d91

Status: done

Started: 2025-06-03 05:10:37
Settings
Chain sequence(s) H: EVQLVQSGAELKKPGASVKVSCKASGYTFTDYYMKWVRQAPGQGLEWIGDIIPSNGATFYNQKFKGRVTITVDKSTSTAYMELSSLRSEDTAVYYCARSHLLRASWFAYWGQGTLVTVSS
L: DFVMTQSPDSLAVSLGERVTMSCKSSQSLLNSGNQKNYLTWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQNDYSYPYTFGQGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:25)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:27)
Show buried residues

Minimal score value
-3.1438
Maximal score value
2.0038
Average score
-0.6103
Total score value
-142.2109

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -2.0695
2 V H -1.0626
3 Q H -1.1104
4 L H 0.0000
5 V H 0.7892
6 Q H 0.0000
7 S H -0.3990
8 G H -0.3986
9 A H 0.2007
11 E H -0.0741
12 L H 0.7628
13 K H -1.0811
14 K H -2.2323
15 P H -2.3017
16 G H -1.6657
17 A H -1.2771
18 S H -1.4057
19 V H 0.0000
20 K H -2.0356
21 V H 0.0000
22 S H -0.4981
23 C H 0.0000
24 K H -0.7339
25 A H 0.0000
26 S H -0.8607
27 G H -1.2148
28 Y H -0.7938
29 T H -0.5707
30 F H 0.0000
35 T H -1.2515
36 D H -1.3569
37 Y H 0.0518
38 Y H 0.4287
39 M H 0.0000
40 K H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.4809
45 A H -0.8648
46 P H -0.7213
47 G H -1.2173
48 Q H -1.7854
49 G H -1.1909
50 L H 0.0000
51 E H -0.6504
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 D H 0.0000
56 I H 0.0000
57 I H -0.0581
58 P H 0.0000
59 S H -1.2944
62 N H -1.4747
63 G H -0.9018
64 A H -0.1401
65 T H 0.3900
66 F H 0.7661
67 Y H -0.3796
68 N H -1.3376
69 Q H -2.5245
70 K H -2.9158
71 F H 0.0000
72 K H -2.8902
74 G H -1.9471
75 R H -1.6826
76 V H 0.0000
77 T H -0.7874
78 I H 0.0000
79 T H -0.3540
80 V H -0.6185
81 D H -1.2395
82 K H -1.9057
83 S H -1.0380
84 T H -0.9266
85 S H -1.1341
86 T H 0.0000
87 A H 0.0000
88 Y H -0.5195
89 M H 0.0000
90 E H -1.4363
91 L H 0.0000
92 S H -1.2107
93 S H -1.3175
94 L H 0.0000
95 R H -3.1438
96 S H -2.4048
97 E H -2.5818
98 D H 0.0000
99 T H -0.7508
100 A H 0.0000
101 V H 0.6058
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 S H 0.0000
108 H H 0.8261
109 L H 1.5871
110 L H 2.0038
111 R H 0.8616
112 A H 0.0000
113 S H 0.0000
114 W H 0.0000
115 F H 0.0000
116 A H 0.0000
117 Y H 0.1794
118 W H -0.0344
119 G H 0.0000
120 Q H -0.9906
121 G H -0.2890
122 T H 0.0000
123 L H 0.9528
124 V H 0.0000
125 T H -0.2415
126 V H 0.0000
127 S H -1.0910
128 S H -0.8796
1 D L -1.2911
2 F L -0.0033
3 V L 0.8514
4 M L 0.0000
5 T L -0.6327
6 Q L 0.0000
7 S L -1.2750
8 P L -1.2173
9 D L -2.2500
10 S L -1.4811
11 L L -0.7526
12 A L -0.6338
13 V L -0.9721
14 S L -1.1327
15 L L -0.4907
16 G L -1.2471
17 E L -2.4882
18 R L -2.6082
19 V L 0.0000
20 T L -0.5225
21 M L 0.0000
22 S L -1.0306
23 C L 0.0000
24 K L -2.0980
25 S L 0.0000
26 S L -0.7930
27 Q L -1.3139
28 S L -1.0137
29 L L 0.0000
30 L L -0.9423
31 N L -1.5845
32 S L -1.6274
33 G L -1.7308
34 N L -2.4030
35 Q L -2.4153
36 K L -1.7514
37 N L -0.9035
38 Y L 0.0000
39 L L 0.0000
40 T L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.1638
46 P L -0.8230
47 G L -1.2909
48 Q L -1.7251
49 P L -1.1111
50 P L 0.0000
51 K L -0.9316
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.1306
56 W L -0.1400
57 A L 0.0000
65 S L -0.5764
66 T L -0.4549
67 R L -1.2541
68 E L -0.9287
69 S L -0.7500
70 G L -0.9954
71 V L 0.0000
72 P L -1.3742
74 D L -2.1938
75 R L -1.5332
76 F L 0.0000
77 S L -0.8511
78 G L 0.0000
79 S L -0.6525
80 G L -1.1108
83 S L -1.1524
84 G L -1.0897
85 T L -1.5473
86 D L -2.1063
87 F L 0.0000
88 T L -0.7622
89 L L 0.0000
90 T L -0.5842
91 I L 0.0000
92 S L -1.6556
93 S L -1.6438
94 L L 0.0000
95 Q L -1.0258
96 A L -0.9561
97 E L -1.5410
98 D L 0.0000
99 V L -0.4430
100 A L 0.0000
101 V L -0.5603
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 N L 0.0000
107 D L 0.0000
108 Y L 0.3088
109 S L 0.1316
114 Y L 0.2770
115 P L -0.3570
116 Y L 0.0000
117 T L 0.0725
118 F L 0.0000
119 G L 0.0000
120 Q L -1.2618
121 G L 0.0000
122 T L 0.0000
123 K L -1.5038
124 L L 0.0000
125 E L -1.2810
126 I L -0.8649
127 K L -1.5785
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Laboratory of Theory of Biopolymers 2018