| Chain sequence(s) |
A: GGGGSGGGGSGGGGS
C: GGGGSGGGGSGGGGS B: GGGGSGGGGSGGGGS E: GGGGSGGGGSGGGGS D: GGGGSGGGGSGGGGS G: GGGGSGGGGSGGGGS F: GGGGSGGGGSGGGGS H: GGGGSGGGGSGGGGS input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,H |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:03)
[INFO] Main: Simulation completed successfully. (00:00:05)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.0900 | |
| 2 | G | A | 0.0000 | |
| 3 | G | A | -1.3392 | |
| 4 | G | A | -1.3954 | |
| 5 | S | A | -1.2074 | |
| 6 | G | A | -1.4040 | |
| 7 | G | A | -1.6303 | |
| 8 | G | A | -1.6208 | |
| 9 | G | A | -1.5558 | |
| 10 | S | A | -1.4655 | |
| 11 | G | A | -1.6146 | |
| 12 | G | A | -1.7774 | |
| 13 | G | A | -1.5713 | |
| 14 | G | A | -1.3283 | |
| 15 | S | A | -0.7701 | |
| 1 | G | B | -1.4147 | |
| 2 | G | B | -1.7199 | |
| 3 | G | B | -1.4816 | |
| 4 | G | B | -1.6370 | |
| 5 | S | B | 0.0000 | |
| 6 | G | B | -1.5581 | |
| 7 | G | B | -1.6979 | |
| 8 | G | B | -1.5439 | |
| 9 | G | B | -1.5407 | |
| 10 | S | B | -1.5663 | |
| 11 | G | B | -1.5786 | |
| 12 | G | B | -1.9037 | |
| 13 | G | B | -1.7774 | |
| 14 | G | B | -1.5222 | |
| 15 | S | B | -0.9023 | |
| 1 | G | C | -1.1617 | |
| 2 | G | C | -1.4669 | |
| 3 | G | C | -1.5520 | |
| 4 | G | C | -1.4767 | |
| 5 | S | C | 0.0000 | |
| 6 | G | C | -1.4573 | |
| 7 | G | C | -1.6865 | |
| 8 | G | C | -1.4820 | |
| 9 | G | C | -1.3974 | |
| 10 | S | C | -1.5332 | |
| 11 | G | C | -1.7150 | |
| 12 | G | C | -1.9196 | |
| 13 | G | C | -1.8417 | |
| 14 | G | C | -1.5533 | |
| 15 | S | C | -0.8902 | |
| 1 | G | D | -1.4600 | |
| 2 | G | D | -1.7970 | |
| 3 | G | D | -1.5601 | |
| 4 | G | D | -1.4559 | |
| 5 | S | D | 0.0000 | |
| 6 | G | D | -1.5091 | |
| 7 | G | D | -1.6908 | |
| 8 | G | D | -1.5172 | |
| 9 | G | D | -1.5171 | |
| 10 | S | D | -1.5249 | |
| 11 | G | D | -1.7340 | |
| 12 | G | D | -1.8753 | |
| 13 | G | D | -1.8053 | |
| 14 | G | D | -1.4187 | |
| 15 | S | D | -0.8532 | |
| 1 | G | E | -1.3427 | |
| 2 | G | E | 0.0000 | |
| 3 | G | E | -1.4510 | |
| 4 | G | E | -1.4452 | |
| 5 | S | E | 0.0000 | |
| 6 | G | E | -1.4693 | |
| 7 | G | E | -1.4619 | |
| 8 | G | E | -1.4832 | |
| 9 | G | E | -1.4617 | |
| 10 | S | E | -1.4990 | |
| 11 | G | E | -1.6529 | |
| 12 | G | E | -1.9009 | |
| 13 | G | E | -1.7922 | |
| 14 | G | E | -1.3729 | |
| 15 | S | E | -0.8398 | |
| 1 | G | F | -1.3014 | |
| 2 | G | F | 0.0000 | |
| 3 | G | F | -1.3074 | |
| 4 | G | F | -1.4113 | |
| 5 | S | F | 0.0000 | |
| 6 | G | F | -1.5091 | |
| 7 | G | F | -1.6265 | |
| 8 | G | F | -1.4664 | |
| 9 | G | F | -1.3662 | |
| 10 | S | F | -1.4548 | |
| 11 | G | F | -1.6708 | |
| 12 | G | F | -1.8758 | |
| 13 | G | F | -1.8400 | |
| 14 | G | F | -1.5446 | |
| 15 | S | F | -0.9755 | |
| 1 | G | G | -1.3704 | |
| 2 | G | G | -1.5361 | |
| 3 | G | G | -1.3478 | |
| 4 | G | G | -1.4069 | |
| 5 | S | G | 0.0000 | |
| 6 | G | G | -1.3668 | |
| 7 | G | G | -1.6377 | |
| 8 | G | G | -1.3945 | |
| 9 | G | G | -1.4177 | |
| 10 | S | G | -1.4291 | |
| 11 | G | G | -1.7509 | |
| 12 | G | G | -1.9566 | |
| 13 | G | G | -1.7912 | |
| 14 | G | G | -1.4661 | |
| 15 | S | G | -0.8105 | |
| 1 | G | H | -1.4358 | |
| 2 | G | H | -1.7996 | |
| 3 | G | H | -1.6480 | |
| 4 | G | H | -1.4194 | |
| 5 | S | H | 0.0000 | |
| 6 | G | H | -1.3792 | |
| 7 | G | H | -1.6804 | |
| 8 | G | H | -1.4474 | |
| 9 | G | H | -1.5317 | |
| 10 | S | H | -1.5449 | |
| 11 | G | H | -1.4272 | |
| 12 | G | H | -1.7235 | |
| 13 | G | H | -1.6337 | |
| 14 | G | H | -1.1802 | |
| 15 | S | H | -0.7885 |