Project name: GS linker_8

Status: done

Started: 2026-06-25 07:32:09
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Chain sequence(s) A: GGGGSGGGGSGGGGS
C: GGGGSGGGGSGGGGS
B: GGGGSGGGGSGGGGS
E: GGGGSGGGGSGGGGS
D: GGGGSGGGGSGGGGS
G: GGGGSGGGGSGGGGS
F: GGGGSGGGGSGGGGS
H: GGGGSGGGGSGGGGS
input PDB
Selected Chain(s) A,C,B,E,D,G,F,H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:03)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:05)
Show buried residues

Minimal score value
-1.9566
Maximal score value
0.0
Average score
-1.3693
Total score value
-164.3108

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -1.0900
2 G A 0.0000
3 G A -1.3392
4 G A -1.3954
5 S A -1.2074
6 G A -1.4040
7 G A -1.6303
8 G A -1.6208
9 G A -1.5558
10 S A -1.4655
11 G A -1.6146
12 G A -1.7774
13 G A -1.5713
14 G A -1.3283
15 S A -0.7701
1 G B -1.4147
2 G B -1.7199
3 G B -1.4816
4 G B -1.6370
5 S B 0.0000
6 G B -1.5581
7 G B -1.6979
8 G B -1.5439
9 G B -1.5407
10 S B -1.5663
11 G B -1.5786
12 G B -1.9037
13 G B -1.7774
14 G B -1.5222
15 S B -0.9023
1 G C -1.1617
2 G C -1.4669
3 G C -1.5520
4 G C -1.4767
5 S C 0.0000
6 G C -1.4573
7 G C -1.6865
8 G C -1.4820
9 G C -1.3974
10 S C -1.5332
11 G C -1.7150
12 G C -1.9196
13 G C -1.8417
14 G C -1.5533
15 S C -0.8902
1 G D -1.4600
2 G D -1.7970
3 G D -1.5601
4 G D -1.4559
5 S D 0.0000
6 G D -1.5091
7 G D -1.6908
8 G D -1.5172
9 G D -1.5171
10 S D -1.5249
11 G D -1.7340
12 G D -1.8753
13 G D -1.8053
14 G D -1.4187
15 S D -0.8532
1 G E -1.3427
2 G E 0.0000
3 G E -1.4510
4 G E -1.4452
5 S E 0.0000
6 G E -1.4693
7 G E -1.4619
8 G E -1.4832
9 G E -1.4617
10 S E -1.4990
11 G E -1.6529
12 G E -1.9009
13 G E -1.7922
14 G E -1.3729
15 S E -0.8398
1 G F -1.3014
2 G F 0.0000
3 G F -1.3074
4 G F -1.4113
5 S F 0.0000
6 G F -1.5091
7 G F -1.6265
8 G F -1.4664
9 G F -1.3662
10 S F -1.4548
11 G F -1.6708
12 G F -1.8758
13 G F -1.8400
14 G F -1.5446
15 S F -0.9755
1 G G -1.3704
2 G G -1.5361
3 G G -1.3478
4 G G -1.4069
5 S G 0.0000
6 G G -1.3668
7 G G -1.6377
8 G G -1.3945
9 G G -1.4177
10 S G -1.4291
11 G G -1.7509
12 G G -1.9566
13 G G -1.7912
14 G G -1.4661
15 S G -0.8105
1 G H -1.4358
2 G H -1.7996
3 G H -1.6480
4 G H -1.4194
5 S H 0.0000
6 G H -1.3792
7 G H -1.6804
8 G H -1.4474
9 G H -1.5317
10 S H -1.5449
11 G H -1.4272
12 G H -1.7235
13 G H -1.6337
14 G H -1.1802
15 S H -0.7885
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Laboratory of Theory of Biopolymers 2018