Project name: ee98321b375957a

Status: done

Started: 2025-06-03 05:17:50
Settings
Chain sequence(s) H: EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVGRIKSKAQGGTTDYAAHVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCARVSFSTFDVWGQGTLVTVSS
L: QSVLTQPPSVSGAPGQRVTISCSGSSSNIGSYYVSWYQQLPGTAPKVLIYRNNQRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCDSWDHSSMNVFGGGTKLTVL
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:32)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:34)
Show buried residues

Minimal score value
-2.8402
Maximal score value
1.799
Average score
-0.5778
Total score value
-131.7481

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -1.7364
2 V H -0.5285
3 Q H -1.1500
4 L H 0.0000
5 V H 0.0160
6 E H 0.0000
7 S H -0.3580
8 G H -0.4854
9 G H 0.2053
11 G H 0.8044
12 L H 1.2858
13 V H -0.2977
14 K H -1.8742
15 P H -2.1189
16 G H -1.6095
17 G H -1.3041
18 S H -1.2744
19 L H -0.8794
20 R H -1.7587
21 L H 0.0000
22 S H -0.4509
23 C H 0.0000
24 A H -0.4832
25 A H 0.0000
26 S H -0.9779
27 G H -0.9042
28 F H -0.3465
29 T H -0.1471
30 F H 0.0000
35 S H -0.9417
36 S H -0.6639
37 Y H -0.0212
38 A H -0.3200
39 M H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.6971
45 A H -1.0525
46 P H -0.7980
47 G H -1.4460
48 K H -2.2838
49 G H -1.5444
50 L H 0.0000
51 E H -1.1869
52 W H 0.0000
53 V H 0.0000
54 G H 0.0000
55 R H -0.4296
56 I H 0.0000
57 K H -1.3070
58 S H 0.0000
59 K H -2.4643
60 A H -1.5516
61 Q H -2.0742
62 G H -1.7347
63 G H -1.5914
64 T H -0.9815
65 T H -0.4376
66 D H -0.6168
67 Y H -0.8545
68 A H -0.9138
69 A H -1.1056
70 H H -1.7360
71 V H 0.0000
72 K H -2.2923
74 G H -1.6546
75 R H -1.6821
76 F H 0.0000
77 T H -0.9486
78 I H 0.0000
79 S H -0.4844
80 R H -1.1907
81 D H -1.5208
82 D H -2.0135
83 S H -1.6439
84 K H -2.4626
85 N H -1.9166
86 T H -1.1721
87 L H 0.0000
88 Y H -0.4952
89 L H 0.0000
90 Q H -1.1996
91 M H 0.0000
92 N H -1.3932
93 S H -1.4088
94 L H 0.0000
95 K H -2.8402
96 T H -2.0950
97 E H -2.5450
98 D H 0.0000
99 T H -0.4567
100 A H 0.0000
101 V H 0.7602
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0545
107 V H 0.0000
108 S H 0.8324
109 F H 1.7990
113 S H 1.0490
114 T H 0.0000
115 F H 0.0000
116 D H -0.3840
117 V H -0.2021
118 W H -0.3739
119 G H 0.0000
120 Q H -1.0420
121 G H -0.0887
122 T H 0.4506
123 L H 1.5471
124 V H 0.0000
125 T H 0.1580
126 V H 0.0000
127 S H -0.9631
128 S H -0.6429
1 Q L -0.8224
2 S L -0.2100
3 V L 0.8824
4 L L 0.0000
5 T L -0.1435
6 Q L -0.4314
7 P L -0.5526
8 P L -0.7862
9 S L -0.7697
11 V L -0.3403
12 S L -0.2654
13 G L -0.4100
14 A L -0.3080
15 P L -0.9862
16 G L -1.8312
17 Q L -2.3960
18 R L -2.6848
19 V L 0.0000
20 T L -0.5088
21 I L 0.0000
22 S L -0.3336
23 C L 0.0000
24 S L -0.2610
25 G L -0.0223
26 S L -0.2276
27 S L -0.6185
28 S L -0.6175
29 N L 0.0000
30 I L 0.0000
35 G L -0.3992
36 S L -0.1553
37 Y L 0.5704
38 Y L 0.9362
39 V L 0.0000
40 S L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L -0.6968
45 L L -0.6055
46 P L -0.4549
47 G L -0.6546
48 T L -0.6404
49 A L -0.6271
50 P L 0.0000
51 K L -1.1385
52 V L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.5290
56 R L -0.7304
57 N L -1.1911
65 N L -2.1269
66 Q L -1.9986
67 R L -2.1305
68 P L -1.0474
69 S L -0.7853
70 G L -0.9622
71 V L 0.0000
72 P L -1.4076
74 D L -2.2309
75 R L -1.5351
76 F L 0.0000
77 S L -1.3333
78 G L -1.2984
79 S L -1.2192
80 K L -1.1890
83 S L -0.8866
84 G L -0.8996
85 T L -0.6926
86 S L -0.7147
87 A L 0.0000
88 S L -0.6094
89 L L 0.0000
90 A L -0.5622
91 I L 0.0000
92 T L -1.8675
93 G L -1.8778
94 L L 0.0000
95 Q L -1.6356
96 A L -1.1113
97 E L -1.9912
98 D L 0.0000
99 E L -1.2537
100 A L 0.0000
101 D L -1.0785
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 D L 0.0000
106 S L 0.0000
107 W L 0.2802
108 D L 0.0000
109 H L -1.0701
113 S L -0.6762
114 S L -0.3193
115 M L -0.0788
116 N L 0.0000
117 V L 0.1890
118 F L 0.0000
119 G L 0.0000
120 G L -0.9756
121 G L 0.0000
122 T L 0.0000
123 K L -1.4390
124 L L 0.0000
125 T L -0.0472
126 V L 0.0877
127 L L 1.2965
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Laboratory of Theory of Biopolymers 2018