| Chain sequence(s) |
A: GNNQQNY
C: GNNQQNY B: GNNQQNY E: GNNQQNY D: GNNQQNY G: GNNQQNY F: GNNQQNY I: GNNQQNY H: GNNQQNY K: GNNQQNY J: GNNQQNY L: GNNQQNY input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:38)
[INFO] Main: Simulation completed successfully. (00:00:40)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.4106 | |
| 2 | N | A | -1.5940 | |
| 3 | N | A | -1.5793 | |
| 4 | Q | A | 0.0000 | |
| 5 | Q | A | -0.1686 | |
| 6 | N | A | 0.0000 | |
| 7 | Y | A | 1.6762 | |
| 1 | G | B | -1.4842 | |
| 2 | N | B | -2.0073 | |
| 3 | N | B | -2.2242 | |
| 4 | Q | B | 0.0000 | |
| 5 | Q | B | -0.8134 | |
| 6 | N | B | 0.0000 | |
| 7 | Y | B | 1.4372 | |
| 1 | G | C | -1.7546 | |
| 2 | N | C | -2.4829 | |
| 3 | N | C | -2.5234 | |
| 4 | Q | C | -1.8505 | |
| 5 | Q | C | -0.9170 | |
| 6 | N | C | -0.0781 | |
| 7 | Y | C | 1.4789 | |
| 1 | G | D | -1.5535 | |
| 2 | N | D | -1.8974 | |
| 3 | N | D | -1.7871 | |
| 4 | Q | D | 0.0000 | |
| 5 | Q | D | -0.2633 | |
| 6 | N | D | 0.0000 | |
| 7 | Y | D | 1.7747 | |
| 1 | G | E | -1.2697 | |
| 2 | N | E | -1.3179 | |
| 3 | N | E | -1.1176 | |
| 4 | Q | E | 0.0000 | |
| 5 | Q | E | 0.1052 | |
| 6 | N | E | 0.0000 | |
| 7 | Y | E | 2.0773 | |
| 1 | G | F | -1.2576 | |
| 2 | N | F | -1.2333 | |
| 3 | N | F | -1.0442 | |
| 4 | Q | F | 0.0000 | |
| 5 | Q | F | 0.1525 | |
| 6 | N | F | 0.0000 | |
| 7 | Y | F | 2.1659 | |
| 1 | G | G | -1.3662 | |
| 2 | N | G | -1.5311 | |
| 3 | N | G | -1.3014 | |
| 4 | Q | G | 0.0000 | |
| 5 | Q | G | -0.2023 | |
| 6 | N | G | 0.0000 | |
| 7 | Y | G | 1.8687 | |
| 1 | G | H | -1.2260 | |
| 2 | N | H | -1.8147 | |
| 3 | N | H | -1.6517 | |
| 4 | Q | H | -1.4986 | |
| 5 | Q | H | -0.9514 | |
| 6 | N | H | -0.5397 | |
| 7 | Y | H | 1.3394 | |
| 1 | G | I | -1.4928 | |
| 2 | N | I | -2.4293 | |
| 3 | N | I | -2.0223 | |
| 4 | Q | I | -1.8525 | |
| 5 | Q | I | -1.1583 | |
| 6 | N | I | -0.9329 | |
| 7 | Y | I | 1.0567 | |
| 1 | G | J | -1.6742 | |
| 2 | N | J | -1.8114 | |
| 3 | N | J | -1.5787 | |
| 4 | Q | J | 0.0000 | |
| 5 | Q | J | -0.5120 | |
| 6 | N | J | 0.0000 | |
| 7 | Y | J | 1.7374 | |
| 1 | G | K | -1.3051 | |
| 2 | N | K | -1.2861 | |
| 3 | N | K | -1.0388 | |
| 4 | Q | K | 0.0000 | |
| 5 | Q | K | 0.1019 | |
| 6 | N | K | 0.0000 | |
| 7 | Y | K | 1.7949 | |
| 1 | G | L | -1.1719 | |
| 2 | N | L | -1.2399 | |
| 3 | N | L | -1.1077 | |
| 4 | Q | L | 0.0000 | |
| 5 | Q | L | 0.0510 | |
| 6 | N | L | 0.0000 | |
| 7 | Y | L | 1.9669 |