| Chain sequence(s) |
H: QVQLQQSGPELVKPGALVKISCKTSGFTFTSYDINWVKQRPGQGLEWIGWIYPGDGSTKYNEKFKDKATLTADKSSSTAYMQLSSLTSDNSAVYFCARQHYGYGDGAFVYWGQGTLVTVST
L: DIVMSQSPSSLAVSVGEKVTMSCKSSQSLLHSSNQNNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVKAEDLAVYYCQQYYSYPRTFGGGTKLEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:03:10)
[INFO] Main: Simulation completed successfully. (00:03:12)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.5195 | |
| 2 | V | H | -0.9847 | |
| 3 | Q | H | -2.0644 | |
| 4 | L | H | 0.0000 | |
| 5 | Q | H | -2.2911 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -0.9569 | |
| 8 | G | H | -0.6255 | |
| 9 | P | H | 0.1431 | |
| 11 | E | H | 0.0639 | |
| 12 | L | H | 1.0747 | |
| 13 | V | H | 0.0837 | |
| 14 | K | H | -1.4009 | |
| 15 | P | H | -1.0368 | |
| 16 | G | H | -0.7293 | |
| 17 | A | H | -0.1279 | |
| 18 | L | H | 0.6299 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -0.8585 | |
| 21 | I | H | 0.0000 | |
| 22 | S | H | -0.7775 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -1.9238 | |
| 25 | T | H | 0.0000 | |
| 26 | S | H | -1.2813 | |
| 27 | G | H | -0.9941 | |
| 28 | F | H | -0.2994 | |
| 29 | T | H | -0.0426 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | -0.6160 | |
| 36 | S | H | -0.1919 | |
| 37 | Y | H | 0.2481 | |
| 38 | D | H | 0.0000 | |
| 39 | I | H | 0.0000 | |
| 40 | N | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | K | H | 0.0000 | |
| 44 | Q | H | -0.8936 | |
| 45 | R | H | -1.7536 | |
| 46 | P | H | -1.0449 | |
| 47 | G | H | -1.2524 | |
| 48 | Q | H | -1.5573 | |
| 49 | G | H | -1.1307 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.8923 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | W | H | 0.1773 | |
| 56 | I | H | 0.0000 | |
| 57 | Y | H | -0.2265 | |
| 58 | P | H | 0.0000 | |
| 59 | G | H | -1.2158 | |
| 62 | D | H | -2.1102 | |
| 63 | G | H | -1.3763 | |
| 64 | S | H | -0.7733 | |
| 65 | T | H | -0.4291 | |
| 66 | K | H | -0.7338 | |
| 67 | Y | H | -1.5013 | |
| 68 | N | H | 0.0000 | |
| 69 | E | H | -3.6879 | |
| 70 | K | H | -3.3742 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -3.8094 | |
| 74 | D | H | -3.3445 | |
| 75 | K | H | -2.1103 | |
| 76 | A | H | 0.0000 | |
| 77 | T | H | -0.8669 | |
| 78 | L | H | 0.0000 | |
| 79 | T | H | -0.3599 | |
| 80 | A | H | -0.9323 | |
| 81 | D | H | -1.3635 | |
| 82 | K | H | -1.9085 | |
| 83 | S | H | -1.0309 | |
| 84 | S | H | -0.9577 | |
| 85 | S | H | -1.0951 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.3217 | |
| 89 | M | H | 0.0000 | |
| 90 | Q | H | -0.4223 | |
| 91 | L | H | 0.0000 | |
| 92 | S | H | -0.3219 | |
| 93 | S | H | -0.5170 | |
| 94 | L | H | 0.0000 | |
| 95 | T | H | -1.0655 | |
| 96 | S | H | -1.4269 | |
| 97 | D | H | -2.0958 | |
| 98 | N | H | 0.0000 | |
| 99 | S | H | -0.5772 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.2523 | |
| 102 | Y | H | 0.0000 | |
| 103 | F | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | Q | H | 0.0000 | |
| 108 | H | H | 0.0937 | |
| 109 | Y | H | 0.4590 | |
| 110 | G | H | 0.2165 | |
| 111 | Y | H | 0.9054 | |
| 112A | G | H | 0.0202 | |
| 112 | D | H | 0.0539 | |
| 113 | G | H | 0.0000 | |
| 114 | A | H | 0.0000 | |
| 115 | F | H | 0.0000 | |
| 116 | V | H | 0.0000 | |
| 117 | Y | H | -0.0696 | |
| 118 | W | H | -0.4708 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.7755 | |
| 121 | G | H | -0.7095 | |
| 122 | T | H | 0.0000 | |
| 123 | L | H | 0.9637 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.2053 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.4465 | |
| 128 | T | H | -0.5418 | |
| 1 | D | L | -1.6098 | |
| 2 | I | L | 0.0000 | |
| 3 | V | L | 0.6854 | |
| 4 | M | L | 0.0000 | |
| 5 | S | L | -0.7405 | |
| 6 | Q | L | -0.7965 | |
| 7 | S | L | -0.8699 | |
| 8 | P | L | -0.5841 | |
| 9 | S | L | -0.7056 | |
| 10 | S | L | -0.7223 | |
| 11 | L | L | -0.4501 | |
| 12 | A | L | -0.5684 | |
| 13 | V | L | 0.0000 | |
| 14 | S | L | -0.9801 | |
| 15 | V | L | -0.2026 | |
| 16 | G | L | -1.0063 | |
| 17 | E | L | -2.3419 | |
| 18 | K | L | -2.5248 | |
| 19 | V | L | 0.0000 | |
| 20 | T | L | -0.4685 | |
| 21 | M | L | 0.0000 | |
| 22 | S | L | -0.9078 | |
| 23 | C | L | 0.0000 | |
| 24 | K | L | -2.1454 | |
| 25 | S | L | 0.0000 | |
| 26 | S | L | -0.9376 | |
| 27 | Q | L | -1.4726 | |
| 28 | S | L | -1.0039 | |
| 29 | L | L | 0.0000 | |
| 30 | L | L | -0.7230 | |
| 31 | H | L | -1.2835 | |
| 32 | S | L | -1.3454 | |
| 33 | S | L | -1.3452 | |
| 34 | N | L | -2.0923 | |
| 35 | Q | L | -2.1455 | |
| 36 | N | L | -1.4713 | |
| 37 | N | L | -0.6470 | |
| 38 | Y | L | 0.0115 | |
| 39 | L | L | 0.0000 | |
| 40 | A | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | -0.8135 | |
| 45 | K | L | -1.1921 | |
| 46 | P | L | -0.8990 | |
| 47 | G | L | -1.4145 | |
| 48 | Q | L | -2.0099 | |
| 49 | S | L | -1.2760 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -0.7496 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | -0.1632 | |
| 56 | W | L | -0.3425 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -0.6034 | |
| 66 | T | L | -0.6267 | |
| 67 | R | L | -1.5355 | |
| 68 | E | L | 0.0000 | |
| 69 | S | L | -0.7052 | |
| 70 | G | L | -0.9023 | |
| 71 | V | L | -0.9739 | |
| 72 | P | L | -1.2655 | |
| 74 | D | L | -2.1402 | |
| 75 | R | L | -1.4854 | |
| 76 | F | L | 0.0000 | |
| 77 | T | L | -0.7516 | |
| 78 | G | L | 0.0000 | |
| 79 | S | L | -0.5777 | |
| 80 | G | L | -1.0334 | |
| 83 | S | L | -1.0436 | |
| 84 | G | L | -1.1394 | |
| 85 | T | L | -1.5443 | |
| 86 | D | L | -2.1105 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.7365 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.5049 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.6910 | |
| 93 | S | L | -1.6680 | |
| 94 | V | L | 0.0000 | |
| 95 | K | L | -1.2315 | |
| 96 | A | L | -0.8616 | |
| 97 | E | L | -1.5973 | |
| 98 | D | L | 0.0000 | |
| 99 | L | L | -0.1733 | |
| 100 | A | L | 0.0000 | |
| 101 | V | L | -0.3644 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | Y | L | 0.0000 | |
| 108 | Y | L | 0.5123 | |
| 109 | S | L | 0.2428 | |
| 114 | Y | L | 0.0184 | |
| 115 | P | L | 0.0000 | |
| 116 | R | L | 0.0000 | |
| 117 | T | L | 0.0340 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -0.7476 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.0676 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -0.9390 | |
| 126 | I | L | -0.7164 | |
| 127 | K | L | -1.4584 |