Project name: query_structure

Status: done

Started: 2026-03-17 00:39:04
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Chain sequence(s) A: QVQLVESGGGLVQAGGSLRLSCAASGFPVHTEYMEWYRQAPGKEREWVAAIESYGWWTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDFGAHAAEYDYWGQGTQVTVS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:04)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:05)
Show buried residues

Minimal score value
-3.6075
Maximal score value
1.8999
Average score
-0.7255
Total score value
-87.0599

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.5016
2 V A -0.9232
3 Q A -1.2600
4 L A 0.0000
5 V A 0.3227
6 E A 0.0000
7 S A -0.7317
8 G A -1.0333
9 G A -0.8192
10 G A -0.0723
11 L A 1.0092
12 V A -0.0434
13 Q A -1.2744
14 A A -1.4740
15 G A -1.3728
16 G A -0.8948
17 S A -1.2773
18 L A -0.9951
19 R A -2.2618
20 L A 0.0000
21 S A -0.5278
22 C A 0.0000
23 A A -0.3898
24 A A 0.0000
25 S A -1.0102
26 G A -1.0699
27 F A -0.6347
28 P A -0.8770
29 V A 0.0000
30 H A -1.3423
31 T A 0.0000
32 E A -1.2546
33 Y A -0.3743
34 M A 0.0000
35 E A 0.0000
36 W A 0.0000
37 Y A -0.3634
38 R A 0.0000
39 Q A -2.1460
40 A A -2.0809
41 P A -1.4457
42 G A -1.9762
43 K A -3.3993
44 E A -3.6075
45 R A -2.8345
46 E A -1.9925
47 W A -0.6521
48 V A 0.0000
49 A A 0.0000
50 A A 0.0000
51 I A 0.0000
52 E A 0.0000
53 S A 0.0000
54 Y A 1.1695
55 G A 0.9041
56 W A 1.8999
57 W A 1.7761
58 T A 1.0735
59 Y A 0.6819
60 Y A -0.4297
61 A A -1.1692
62 D A -2.3220
63 S A -1.7372
64 V A 0.0000
65 K A -2.5115
66 G A -1.7765
67 R A -1.5491
68 F A 0.0000
69 T A -0.8726
70 I A 0.0000
71 S A -0.4438
72 R A -0.8796
73 D A -1.5871
74 N A -1.8512
75 A A -1.4948
76 K A -2.3183
77 N A -1.7520
78 T A -1.0303
79 V A 0.0000
80 Y A -0.7418
81 L A 0.0000
82 Q A -1.5737
83 M A 0.0000
84 N A -1.4328
85 S A -1.2343
86 L A 0.0000
87 K A -2.5347
88 P A -2.0112
89 E A -2.4160
90 D A 0.0000
91 T A -1.0037
92 A A 0.0000
93 V A -0.5914
94 Y A 0.0000
95 Y A -0.2384
96 C A 0.0000
97 N A 0.0000
98 V A 0.0000
99 K A -1.2401
100 D A -1.0112
101 F A -0.1658
102 G A -0.5207
103 A A -0.2901
104 H A -1.0683
105 A A -0.6092
106 A A -0.9571
107 E A -1.8426
108 Y A -0.7878
109 D A -1.6454
110 Y A -0.5950
111 W A -0.0954
112 G A -0.2358
113 Q A -1.1273
114 G A 0.0000
115 T A 0.0000
116 Q A -1.1697
117 V A 0.0000
118 T A -0.3376
119 V A 0.0000
120 S A -0.7812
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Laboratory of Theory of Biopolymers 2018