| Chain sequence(s) |
A: QVQLVESGGGLVQAGGSLRLSCAASGFPVHTEYMEWYRQAPGKEREWVAAIESYGWWTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDFGAHAAEYDYWGQGTQVTVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:04)
[INFO] Main: Simulation completed successfully. (00:02:05)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.5016 | |
| 2 | V | A | -0.9232 | |
| 3 | Q | A | -1.2600 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.3227 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.7317 | |
| 8 | G | A | -1.0333 | |
| 9 | G | A | -0.8192 | |
| 10 | G | A | -0.0723 | |
| 11 | L | A | 1.0092 | |
| 12 | V | A | -0.0434 | |
| 13 | Q | A | -1.2744 | |
| 14 | A | A | -1.4740 | |
| 15 | G | A | -1.3728 | |
| 16 | G | A | -0.8948 | |
| 17 | S | A | -1.2773 | |
| 18 | L | A | -0.9951 | |
| 19 | R | A | -2.2618 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.5278 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.3898 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -1.0102 | |
| 26 | G | A | -1.0699 | |
| 27 | F | A | -0.6347 | |
| 28 | P | A | -0.8770 | |
| 29 | V | A | 0.0000 | |
| 30 | H | A | -1.3423 | |
| 31 | T | A | 0.0000 | |
| 32 | E | A | -1.2546 | |
| 33 | Y | A | -0.3743 | |
| 34 | M | A | 0.0000 | |
| 35 | E | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.3634 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -2.1460 | |
| 40 | A | A | -2.0809 | |
| 41 | P | A | -1.4457 | |
| 42 | G | A | -1.9762 | |
| 43 | K | A | -3.3993 | |
| 44 | E | A | -3.6075 | |
| 45 | R | A | -2.8345 | |
| 46 | E | A | -1.9925 | |
| 47 | W | A | -0.6521 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | E | A | 0.0000 | |
| 53 | S | A | 0.0000 | |
| 54 | Y | A | 1.1695 | |
| 55 | G | A | 0.9041 | |
| 56 | W | A | 1.8999 | |
| 57 | W | A | 1.7761 | |
| 58 | T | A | 1.0735 | |
| 59 | Y | A | 0.6819 | |
| 60 | Y | A | -0.4297 | |
| 61 | A | A | -1.1692 | |
| 62 | D | A | -2.3220 | |
| 63 | S | A | -1.7372 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.5115 | |
| 66 | G | A | -1.7765 | |
| 67 | R | A | -1.5491 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.8726 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.4438 | |
| 72 | R | A | -0.8796 | |
| 73 | D | A | -1.5871 | |
| 74 | N | A | -1.8512 | |
| 75 | A | A | -1.4948 | |
| 76 | K | A | -2.3183 | |
| 77 | N | A | -1.7520 | |
| 78 | T | A | -1.0303 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | -0.7418 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.5737 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.4328 | |
| 85 | S | A | -1.2343 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.5347 | |
| 88 | P | A | -2.0112 | |
| 89 | E | A | -2.4160 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -1.0037 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.5914 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.2384 | |
| 96 | C | A | 0.0000 | |
| 97 | N | A | 0.0000 | |
| 98 | V | A | 0.0000 | |
| 99 | K | A | -1.2401 | |
| 100 | D | A | -1.0112 | |
| 101 | F | A | -0.1658 | |
| 102 | G | A | -0.5207 | |
| 103 | A | A | -0.2901 | |
| 104 | H | A | -1.0683 | |
| 105 | A | A | -0.6092 | |
| 106 | A | A | -0.9571 | |
| 107 | E | A | -1.8426 | |
| 108 | Y | A | -0.7878 | |
| 109 | D | A | -1.6454 | |
| 110 | Y | A | -0.5950 | |
| 111 | W | A | -0.0954 | |
| 112 | G | A | -0.2358 | |
| 113 | Q | A | -1.1273 | |
| 114 | G | A | 0.0000 | |
| 115 | T | A | 0.0000 | |
| 116 | Q | A | -1.1697 | |
| 117 | V | A | 0.0000 | |
| 118 | T | A | -0.3376 | |
| 119 | V | A | 0.0000 | |
| 120 | S | A | -0.7812 |