Project name: query_structure

Status: done

Started: 2026-03-17 00:17:56
Settings
Chain sequence(s) A: PSAVNMTPPAVNMTPSAVNMTPPAVNMT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:04)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:05)
Show buried residues

Minimal score value
-0.0992
Maximal score value
1.4085
Average score
0.4236
Total score value
11.8608

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 P A -0.0992
2 S A -0.0150
3 A A 0.4930
4 V A 1.3741
5 N A 0.0551
6 M A 0.7824
7 T A 0.1535
8 P A -0.0258
9 P A 0.1050
10 A A 0.4751
11 V A 1.3568
12 N A 0.0456
13 M A 0.7777
14 T A 0.1295
15 P A 0.0280
16 S A 0.1215
17 A A 0.4780
18 V A 1.4085
19 N A 0.0415
20 M A 0.8232
21 T A 0.1227
22 P A -0.0034
23 P A 0.1548
24 A A 0.4966
25 V A 1.3666
26 N A 0.0469
27 M A 0.8987
28 T A 0.2694
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Laboratory of Theory of Biopolymers 2018