Project name: ef19fce17d06d61

Status: done

Started: 2026-02-12 13:49:51
Settings
Chain sequence(s) A: FGKGHGF
C: FGKGHGF
B: FGKGHGF
E: FGKGHGF
D: FGKGHGF
G: FGKGHGF
F: FGKGHGF
I: FGKGHGF
H: FGKGHGF
K: FGKGHGF
J: FGKGHGF
M: FGKGHGF
L: FGKGHGF
O: FGKGHGF
N: FGKGHGF
Q: FGKGHGF
P: FGKGHGF
S: FGKGHGF
R: FGKGHGF
T: FGKGHGF
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:07)
[INFO]       Main:     Simulation completed successfully.                                          (00:05:13)
Show buried residues

Minimal score value
-2.5836
Maximal score value
3.6642
Average score
0.3857
Total score value
53.9918

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 F A 0.1118
2 G A 0.0000
3 K A 0.0000
4 G A 0.0000
5 H A 0.0000
6 G A 2.6224
7 F A 3.2946
1 F B 0.0000
2 G B 0.0000
3 K B 0.0000
4 G B 0.0000
5 H B 1.0633
6 G B 2.3252
7 F B 3.6456
1 F C 0.0000
2 G C 0.0000
3 K C 0.0000
4 G C 0.0000
5 H C 0.0000
6 G C 0.0000
7 F C 3.2961
1 F D 0.0296
2 G D -1.4320
3 K D 0.0000
4 G D 0.0000
5 H D 0.0000
6 G D 2.3413
7 F D 2.8475
1 F E 1.8797
2 G E 0.0097
3 K E -2.0268
4 G E -1.9619
5 H E -1.2071
6 G E 1.1793
7 F E 2.7969
1 F F 2.0088
2 G F 0.0000
3 K F -2.0980
4 G F -2.1128
5 H F -0.7891
6 G F 0.0000
7 F F 3.2869
1 F G 2.1980
2 G G 0.0000
3 K G -1.6220
4 G G 0.0000
5 H G -0.2208
6 G G 0.0000
7 F G 3.5443
1 F H 1.7656
2 G H 0.0000
3 K H -1.4297
4 G H 0.0000
5 H H 0.0076
6 G H 0.0000
7 F H 3.4402
1 F I 2.3734
2 G I 0.0000
3 K I -2.1469
4 G I 0.0000
5 H I -0.1403
6 G I 1.9518
7 F I 3.5157
1 F J 1.9079
2 G J -0.3004
3 K J -1.9738
4 G J -1.6339
5 H J -0.7622
6 G J 1.2161
7 F J 2.7787
1 F K 1.7020
2 G K 0.0000
3 K K -2.5135
4 G K -1.2934
5 H K 0.4155
6 G K 0.0000
7 F K 3.0510
1 F L 2.4963
2 G L 0.6309
3 K L -1.6534
4 G L -1.7040
5 H L -1.0417
6 G L 0.0000
7 F L 3.1131
1 F M 2.1228
2 G M 0.0000
3 K M -1.5387
4 G M 0.0000
5 H M -0.4675
6 G M 0.0000
7 F M 3.2603
1 F N 0.0000
2 G N 0.0000
3 K N 0.0000
4 G N 0.0000
5 H N 0.0000
6 G N 1.9084
7 F N 2.5489
1 F O 1.6239
2 G O 0.0000
3 K O -2.1832
4 G O 0.0000
5 H O -0.4423
6 G O 0.0000
7 F O 3.6642
1 F P 1.4821
2 G P 0.0000
3 K P -2.4904
4 G P 0.0000
5 H P -0.5857
6 G P 0.0000
7 F P 3.4540
1 F Q 1.2278
2 G Q 0.0000
3 K Q -2.5836
4 G Q 0.0000
5 H Q -0.7024
6 G Q 0.0000
7 F Q 3.1804
1 F R 1.0501
2 G R 0.0000
3 K R -2.3740
4 G R -1.8139
5 H R -0.6399
6 G R 1.1573
7 F R 2.2357
1 F S 0.8685
2 G S -1.0705
3 K S -1.8499
4 G S -1.4277
5 H S -0.7779
6 G S 0.8601
7 F S 2.1759
1 F T 0.1193
2 G T 0.0000
3 K T -1.5031
4 G T 0.0000
5 H T 0.2103
6 G T 1.7710
7 F T 2.7384
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Laboratory of Theory of Biopolymers 2018