| Chain sequence(s) |
A: FGKGHGF
C: FGKGHGF B: FGKGHGF E: FGKGHGF D: FGKGHGF G: FGKGHGF F: FGKGHGF I: FGKGHGF H: FGKGHGF K: FGKGHGF J: FGKGHGF M: FGKGHGF L: FGKGHGF O: FGKGHGF N: FGKGHGF Q: FGKGHGF P: FGKGHGF S: FGKGHGF R: FGKGHGF T: FGKGHGF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:05:07)
[INFO] Main: Simulation completed successfully. (00:05:13)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 0.1118 | |
| 2 | G | A | 0.0000 | |
| 3 | K | A | 0.0000 | |
| 4 | G | A | 0.0000 | |
| 5 | H | A | 0.0000 | |
| 6 | G | A | 2.6224 | |
| 7 | F | A | 3.2946 | |
| 1 | F | B | 0.0000 | |
| 2 | G | B | 0.0000 | |
| 3 | K | B | 0.0000 | |
| 4 | G | B | 0.0000 | |
| 5 | H | B | 1.0633 | |
| 6 | G | B | 2.3252 | |
| 7 | F | B | 3.6456 | |
| 1 | F | C | 0.0000 | |
| 2 | G | C | 0.0000 | |
| 3 | K | C | 0.0000 | |
| 4 | G | C | 0.0000 | |
| 5 | H | C | 0.0000 | |
| 6 | G | C | 0.0000 | |
| 7 | F | C | 3.2961 | |
| 1 | F | D | 0.0296 | |
| 2 | G | D | -1.4320 | |
| 3 | K | D | 0.0000 | |
| 4 | G | D | 0.0000 | |
| 5 | H | D | 0.0000 | |
| 6 | G | D | 2.3413 | |
| 7 | F | D | 2.8475 | |
| 1 | F | E | 1.8797 | |
| 2 | G | E | 0.0097 | |
| 3 | K | E | -2.0268 | |
| 4 | G | E | -1.9619 | |
| 5 | H | E | -1.2071 | |
| 6 | G | E | 1.1793 | |
| 7 | F | E | 2.7969 | |
| 1 | F | F | 2.0088 | |
| 2 | G | F | 0.0000 | |
| 3 | K | F | -2.0980 | |
| 4 | G | F | -2.1128 | |
| 5 | H | F | -0.7891 | |
| 6 | G | F | 0.0000 | |
| 7 | F | F | 3.2869 | |
| 1 | F | G | 2.1980 | |
| 2 | G | G | 0.0000 | |
| 3 | K | G | -1.6220 | |
| 4 | G | G | 0.0000 | |
| 5 | H | G | -0.2208 | |
| 6 | G | G | 0.0000 | |
| 7 | F | G | 3.5443 | |
| 1 | F | H | 1.7656 | |
| 2 | G | H | 0.0000 | |
| 3 | K | H | -1.4297 | |
| 4 | G | H | 0.0000 | |
| 5 | H | H | 0.0076 | |
| 6 | G | H | 0.0000 | |
| 7 | F | H | 3.4402 | |
| 1 | F | I | 2.3734 | |
| 2 | G | I | 0.0000 | |
| 3 | K | I | -2.1469 | |
| 4 | G | I | 0.0000 | |
| 5 | H | I | -0.1403 | |
| 6 | G | I | 1.9518 | |
| 7 | F | I | 3.5157 | |
| 1 | F | J | 1.9079 | |
| 2 | G | J | -0.3004 | |
| 3 | K | J | -1.9738 | |
| 4 | G | J | -1.6339 | |
| 5 | H | J | -0.7622 | |
| 6 | G | J | 1.2161 | |
| 7 | F | J | 2.7787 | |
| 1 | F | K | 1.7020 | |
| 2 | G | K | 0.0000 | |
| 3 | K | K | -2.5135 | |
| 4 | G | K | -1.2934 | |
| 5 | H | K | 0.4155 | |
| 6 | G | K | 0.0000 | |
| 7 | F | K | 3.0510 | |
| 1 | F | L | 2.4963 | |
| 2 | G | L | 0.6309 | |
| 3 | K | L | -1.6534 | |
| 4 | G | L | -1.7040 | |
| 5 | H | L | -1.0417 | |
| 6 | G | L | 0.0000 | |
| 7 | F | L | 3.1131 | |
| 1 | F | M | 2.1228 | |
| 2 | G | M | 0.0000 | |
| 3 | K | M | -1.5387 | |
| 4 | G | M | 0.0000 | |
| 5 | H | M | -0.4675 | |
| 6 | G | M | 0.0000 | |
| 7 | F | M | 3.2603 | |
| 1 | F | N | 0.0000 | |
| 2 | G | N | 0.0000 | |
| 3 | K | N | 0.0000 | |
| 4 | G | N | 0.0000 | |
| 5 | H | N | 0.0000 | |
| 6 | G | N | 1.9084 | |
| 7 | F | N | 2.5489 | |
| 1 | F | O | 1.6239 | |
| 2 | G | O | 0.0000 | |
| 3 | K | O | -2.1832 | |
| 4 | G | O | 0.0000 | |
| 5 | H | O | -0.4423 | |
| 6 | G | O | 0.0000 | |
| 7 | F | O | 3.6642 | |
| 1 | F | P | 1.4821 | |
| 2 | G | P | 0.0000 | |
| 3 | K | P | -2.4904 | |
| 4 | G | P | 0.0000 | |
| 5 | H | P | -0.5857 | |
| 6 | G | P | 0.0000 | |
| 7 | F | P | 3.4540 | |
| 1 | F | Q | 1.2278 | |
| 2 | G | Q | 0.0000 | |
| 3 | K | Q | -2.5836 | |
| 4 | G | Q | 0.0000 | |
| 5 | H | Q | -0.7024 | |
| 6 | G | Q | 0.0000 | |
| 7 | F | Q | 3.1804 | |
| 1 | F | R | 1.0501 | |
| 2 | G | R | 0.0000 | |
| 3 | K | R | -2.3740 | |
| 4 | G | R | -1.8139 | |
| 5 | H | R | -0.6399 | |
| 6 | G | R | 1.1573 | |
| 7 | F | R | 2.2357 | |
| 1 | F | S | 0.8685 | |
| 2 | G | S | -1.0705 | |
| 3 | K | S | -1.8499 | |
| 4 | G | S | -1.4277 | |
| 5 | H | S | -0.7779 | |
| 6 | G | S | 0.8601 | |
| 7 | F | S | 2.1759 | |
| 1 | F | T | 0.1193 | |
| 2 | G | T | 0.0000 | |
| 3 | K | T | -1.5031 | |
| 4 | G | T | 0.0000 | |
| 5 | H | T | 0.2103 | |
| 6 | G | T | 1.7710 | |
| 7 | F | T | 2.7384 |