| Chain sequence(s) |
A: FKFKGHFKF
C: FKFKGHFKF B: FKFKGHFKF D: FKFKGHFKF input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:02)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:02)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:02)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:02)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:02)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:52)
[INFO] Main: Simulation completed successfully. (00:02:53)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 1.5709 | |
| 2 | K | A | -1.0003 | |
| 3 | F | A | -0.6252 | |
| 4 | K | A | -2.4174 | |
| 5 | G | A | -1.3813 | |
| 6 | H | A | -1.2338 | |
| 7 | F | A | 0.0939 | |
| 8 | K | A | -0.8350 | |
| 9 | F | A | 1.2123 | |
| 1 | F | B | 1.5633 | |
| 2 | K | B | -1.1060 | |
| 3 | F | B | -1.0263 | |
| 4 | K | B | -2.7916 | |
| 5 | G | B | 0.0000 | |
| 6 | H | B | -2.0717 | |
| 7 | F | B | 0.0000 | |
| 8 | K | B | -1.3534 | |
| 9 | F | B | 0.3892 | |
| 1 | F | C | 1.6483 | |
| 2 | K | C | -0.7871 | |
| 3 | F | C | -0.4782 | |
| 4 | K | C | -2.2171 | |
| 5 | G | C | -1.3678 | |
| 6 | H | C | -1.6295 | |
| 7 | F | C | -0.6333 | |
| 8 | K | C | -0.9613 | |
| 9 | F | C | 1.2733 | |
| 1 | F | D | 1.6920 | |
| 2 | K | D | -0.9113 | |
| 3 | F | D | -1.1364 | |
| 4 | K | D | -2.7440 | |
| 5 | G | D | -1.7823 | |
| 6 | H | D | -2.0526 | |
| 7 | F | D | -0.9360 | |
| 8 | K | D | -1.2678 | |
| 9 | F | D | 0.5577 |