Project name: Pep5-Mut15-KLVFF

Status: done

Started: 2026-02-11 08:38:55
Settings
Chain sequence(s) A: RGDGWKPFVIDADVLFALGHGIGHIKLVFF
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       runJob:   FoldX not utilized. Treating input pdb file as it was already optimized.    (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:02)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:03)
Show buried residues

Minimal score value
-1.9554
Maximal score value
2.621
Average score
0.5001
Total score value
15.0021

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 R A -1.9310
2 G A -1.1682
3 D A -1.9554
4 G A -0.6135
5 W A 0.7772
6 K A -1.5004
7 P A -0.0687
8 F A 2.2584
9 V A 2.5221
10 I A 2.0457
11 D A -1.4645
12 A A -0.4194
13 D A -1.4100
14 V A 1.7322
15 L A 2.2636
16 F A 2.0626
17 A A 0.7302
18 L A 1.4741
19 G A -0.3206
20 H A -0.8562
21 G A 0.0163
22 I A 1.9059
23 G A -0.1388
24 H A -0.3606
25 I A 1.5629
26 K A -1.0341
27 L A 1.5623
28 V A 2.4269
29 F A 2.6210
30 F A 2.2821
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Laboratory of Theory of Biopolymers 2018