| Chain sequence(s) |
A: RGDGWKPFVIDADVLFALGHGIGHIKLVFF
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 5 Å |
| FoldX usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:02)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:02)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:02)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:02)
[INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:02)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:02)
[INFO] Main: Simulation completed successfully. (00:00:03)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | R | A | -1.9310 | |
| 2 | G | A | -1.1682 | |
| 3 | D | A | -1.9554 | |
| 4 | G | A | -0.6135 | |
| 5 | W | A | 0.7772 | |
| 6 | K | A | -1.5004 | |
| 7 | P | A | -0.0687 | |
| 8 | F | A | 2.2584 | |
| 9 | V | A | 2.5221 | |
| 10 | I | A | 2.0457 | |
| 11 | D | A | -1.4645 | |
| 12 | A | A | -0.4194 | |
| 13 | D | A | -1.4100 | |
| 14 | V | A | 1.7322 | |
| 15 | L | A | 2.2636 | |
| 16 | F | A | 2.0626 | |
| 17 | A | A | 0.7302 | |
| 18 | L | A | 1.4741 | |
| 19 | G | A | -0.3206 | |
| 20 | H | A | -0.8562 | |
| 21 | G | A | 0.0163 | |
| 22 | I | A | 1.9059 | |
| 23 | G | A | -0.1388 | |
| 24 | H | A | -0.3606 | |
| 25 | I | A | 1.5629 | |
| 26 | K | A | -1.0341 | |
| 27 | L | A | 1.5623 | |
| 28 | V | A | 2.4269 | |
| 29 | F | A | 2.6210 | |
| 30 | F | A | 2.2821 |