| Chain sequence(s) |
C: DARRKAEMLQNEAKTLLAQANSKLQLLKDLERKYEDNQRYLEDKAQELARLEGEVRSLLKDISQKVAVYSTCL
B: ENVERWQGQYEGLRGQDLGQAVLDAGHSVSTLEKTLPQLSAKLSILENRGVHNASLALSASIGRVRELCAQARGAASKVKV D: DTVDLNKLNEIEGTLNKAKDEMKVSDLDRKVSDLENEAKKQEAAIMDYNRDIEEIMKCIRNLEDIRKTLPSGCFNTPSIEKP input PDB |
| Selected Chain(s) | B,C,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | SQ40B |
| Energy difference between WT (input) and mutated protein (by FoldX) | -0.486194 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] FoldX: Building mutant model (00:03:46)
[INFO] FoldX: Starting FoldX energy minimalization (00:03:57)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:07:37)
[INFO] Main: Simulation completed successfully. (00:07:40)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | B | -2.8729 | |
| 2 | N | B | -2.3170 | |
| 3 | V | B | -0.8212 | |
| 4 | E | B | -2.9636 | |
| 5 | R | B | -3.2710 | |
| 6 | W | B | -1.2774 | |
| 7 | Q | B | -1.8822 | |
| 8 | G | B | -2.4965 | |
| 9 | Q | B | -2.0969 | |
| 10 | Y | B | -1.6877 | |
| 11 | E | B | -2.8716 | |
| 12 | G | B | -2.0248 | |
| 13 | L | B | -1.1621 | |
| 14 | R | B | -2.9472 | |
| 15 | G | B | -2.9510 | |
| 16 | Q | B | -2.5089 | |
| 17 | D | B | -2.5556 | |
| 18 | L | B | -2.5133 | |
| 19 | G | B | -1.6158 | |
| 20 | Q | B | -1.5568 | |
| 21 | A | B | 0.0000 | |
| 22 | V | B | 0.0000 | |
| 23 | L | B | 0.0468 | |
| 24 | D | B | -1.0103 | |
| 25 | A | B | 0.0000 | |
| 26 | G | B | -1.0355 | |
| 27 | H | B | -1.2921 | |
| 28 | S | B | -1.3791 | |
| 29 | V | B | 0.0000 | |
| 30 | S | B | -1.5296 | |
| 31 | T | B | -1.7188 | |
| 32 | L | B | 0.0000 | |
| 33 | E | B | -3.1287 | |
| 34 | K | B | -2.8540 | |
| 35 | T | B | -1.9077 | |
| 36 | L | B | 0.0000 | |
| 37 | P | B | -1.7107 | |
| 38 | Q | B | -1.6666 | |
| 39 | L | B | 0.0000 | |
| 40 | Q | B | -0.5383 | mutated: SQ40B |
| 41 | A | B | -0.2225 | |
| 42 | K | B | -0.5052 | |
| 43 | L | B | 0.0000 | |
| 44 | S | B | -0.4382 | |
| 45 | I | B | 0.5611 | |
| 46 | L | B | 0.0000 | |
| 47 | E | B | -1.9942 | |
| 48 | N | B | -1.5109 | |
| 49 | R | B | -0.8952 | |
| 50 | G | B | -0.4749 | |
| 51 | V | B | 0.8610 | |
| 52 | H | B | 0.0587 | |
| 53 | N | B | -0.5641 | |
| 54 | A | B | 0.0000 | |
| 55 | S | B | 0.4189 | |
| 56 | L | B | 1.2990 | |
| 57 | A | B | 0.3360 | |
| 58 | L | B | 0.0000 | |
| 59 | S | B | -0.0531 | |
| 60 | A | B | -0.0386 | |
| 61 | S | B | -0.6825 | |
| 62 | I | B | 0.0000 | |
| 63 | G | B | -1.8903 | |
| 64 | R | B | -2.3694 | |
| 65 | V | B | 0.0000 | |
| 66 | R | B | -2.8527 | |
| 67 | E | B | -3.2156 | |
| 68 | L | B | 0.0000 | |
| 69 | C | B | 0.0000 | |
| 70 | A | B | -1.8918 | |
| 71 | Q | B | -2.0347 | |
| 72 | A | B | 0.0000 | |
| 73 | R | B | -2.1981 | |
| 74 | G | B | -1.5607 | |
| 75 | A | B | -1.6861 | |
| 76 | A | B | 0.0000 | |
| 77 | S | B | -1.6091 | |
| 78 | K | B | -2.2208 | |
| 79 | V | B | 0.0000 | |
| 80 | K | B | -1.2967 | |
| 81 | V | B | 0.6479 | |
| 1 | D | C | -2.6101 | |
| 2 | A | C | -2.3875 | |
| 3 | R | C | -3.2139 | |
| 4 | R | C | -3.2931 | |
| 5 | K | C | -2.4856 | |
| 6 | A | C | 0.0000 | |
| 7 | E | C | -2.8067 | |
| 8 | M | C | -1.8869 | |
| 9 | L | C | 0.0000 | |
| 10 | Q | C | -2.1849 | |
| 11 | N | C | -2.3679 | |
| 12 | E | C | -2.2159 | |
| 13 | A | C | 0.0000 | |
| 14 | K | C | -2.2809 | |
| 15 | T | C | -1.5702 | |
| 16 | L | C | -1.2206 | |
| 17 | L | C | -1.5540 | |
| 18 | A | C | -1.1714 | |
| 19 | Q | C | -1.6098 | |
| 20 | A | C | 0.0000 | |
| 21 | N | C | -1.6373 | |
| 22 | S | C | -1.4867 | |
| 23 | K | C | -1.7632 | |
| 24 | L | C | -1.6148 | |
| 25 | Q | C | -2.0924 | |
| 26 | L | C | -1.3423 | |
| 27 | L | C | 0.0000 | |
| 28 | K | C | -2.3669 | |
| 29 | D | C | -2.5643 | |
| 30 | L | C | 0.0000 | |
| 31 | E | C | -2.6214 | |
| 32 | R | C | -3.8130 | |
| 33 | K | C | -3.4888 | |
| 34 | Y | C | -2.9003 | |
| 35 | E | C | -3.5684 | |
| 36 | D | C | -3.6733 | |
| 37 | N | C | 0.0000 | |
| 38 | Q | C | -2.4860 | |
| 39 | R | C | -3.1098 | |
| 40 | Y | C | -1.9276 | |
| 41 | L | C | 0.0000 | |
| 42 | E | C | -2.6695 | |
| 43 | D | C | -3.0287 | |
| 44 | K | C | -2.3135 | |
| 45 | A | C | -1.8714 | |
| 46 | Q | C | -2.7642 | |
| 47 | E | C | -2.5641 | |
| 48 | L | C | 0.0000 | |
| 49 | A | C | -1.9529 | |
| 50 | R | C | -2.7486 | |
| 51 | L | C | -1.7784 | |
| 52 | E | C | 0.0000 | |
| 53 | G | C | -2.0546 | |
| 54 | E | C | -2.4251 | |
| 55 | V | C | 0.0000 | |
| 56 | R | C | -2.3911 | |
| 57 | S | C | -2.0254 | |
| 58 | L | C | 0.0000 | |
| 59 | L | C | -2.3848 | |
| 60 | K | C | -2.9972 | |
| 61 | D | C | -2.6915 | |
| 62 | I | C | 0.0000 | |
| 63 | S | C | -2.0906 | |
| 64 | Q | C | -1.9943 | |
| 65 | K | C | -1.5059 | |
| 66 | V | C | 0.0000 | |
| 67 | A | C | -0.3977 | |
| 68 | V | C | 0.9034 | |
| 69 | Y | C | 0.6714 | |
| 70 | S | C | 0.3115 | |
| 71 | T | C | 0.8508 | |
| 72 | C | C | 1.4475 | |
| 73 | L | C | 1.7673 | |
| 1 | D | D | -1.5056 | |
| 2 | T | D | -0.4506 | |
| 3 | V | D | 0.5063 | |
| 4 | D | D | -0.9940 | |
| 5 | L | D | -1.3286 | |
| 6 | N | D | -2.2111 | |
| 7 | K | D | -2.1121 | |
| 8 | L | D | 0.0000 | |
| 9 | N | D | -3.0968 | |
| 10 | E | D | -3.3580 | |
| 11 | I | D | 0.0000 | |
| 12 | E | D | -2.4814 | |
| 13 | G | D | -2.1320 | |
| 14 | T | D | -2.2281 | |
| 15 | L | D | 0.0000 | |
| 16 | N | D | -2.6754 | |
| 17 | K | D | -3.5730 | |
| 18 | A | D | 0.0000 | |
| 19 | K | D | -2.8426 | |
| 20 | D | D | -3.4789 | |
| 21 | E | D | -3.0265 | |
| 22 | M | D | 0.0000 | |
| 23 | K | D | -2.9961 | |
| 24 | V | D | -0.5956 | |
| 25 | S | D | -1.7746 | |
| 26 | D | D | -3.1252 | |
| 27 | L | D | 0.0000 | |
| 28 | D | D | -3.9933 | |
| 29 | R | D | -4.1868 | |
| 30 | K | D | -3.7399 | |
| 31 | V | D | 0.0000 | |
| 32 | S | D | -3.1484 | |
| 33 | D | D | -4.2216 | |
| 34 | L | D | 0.0000 | |
| 35 | E | D | -3.7105 | |
| 36 | N | D | -3.9180 | |
| 37 | E | D | -3.9387 | |
| 38 | A | D | 0.0000 | |
| 39 | K | D | -4.1002 | |
| 40 | K | D | -3.6787 | |
| 41 | Q | D | -2.7840 | |
| 42 | E | D | -2.4525 | |
| 43 | A | D | -1.8276 | |
| 44 | A | D | -1.6353 | |
| 45 | I | D | 0.0000 | |
| 46 | M | D | -1.2287 | |
| 47 | D | D | -2.6173 | |
| 48 | Y | D | -2.0280 | |
| 49 | N | D | -2.3971 | |
| 50 | R | D | -3.6595 | |
| 51 | D | D | -3.2644 | |
| 52 | I | D | 0.0000 | |
| 53 | E | D | -3.8090 | |
| 54 | E | D | -3.6192 | |
| 55 | I | D | 0.0000 | |
| 56 | M | D | -2.1413 | |
| 57 | K | D | -2.9149 | |
| 58 | C | D | -2.3573 | |
| 59 | I | D | 0.0000 | |
| 60 | R | D | -2.8270 | |
| 61 | N | D | -2.6299 | |
| 62 | L | D | 0.0000 | |
| 63 | E | D | -2.8428 | |
| 64 | D | D | -3.2124 | |
| 65 | I | D | -2.0149 | |
| 66 | R | D | -2.6258 | |
| 67 | K | D | -2.7121 | |
| 68 | T | D | -1.2448 | |
| 69 | L | D | 0.0000 | |
| 70 | P | D | 0.0519 | |
| 71 | S | D | -0.1990 | |
| 72 | G | D | 0.3147 | |
| 73 | C | D | 1.4346 | |
| 74 | F | D | 1.7618 | |
| 75 | N | D | 0.1275 | |
| 76 | T | D | 0.3351 | |
| 77 | P | D | 0.1095 | |
| 78 | S | D | -0.3981 | |
| 79 | I | D | 0.3595 | |
| 80 | E | D | -1.8240 | |
| 81 | K | D | -2.1228 | |
| 82 | P | D | -1.3013 |