Project name: apo sod1

Status: done

Started: 2026-01-19 13:59:09
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Chain sequence(s) A: ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCITGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:37)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:38)
Show buried residues

Minimal score value
-4.3823
Maximal score value
1.4502
Average score
-1.1967
Total score value
-183.0956

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A -1.5561
2 T A -1.2504
3 K A -1.3237
4 A A 0.0000
5 V A 0.9340
6 C A 0.0000
7 V A 1.2230
8 L A 0.0000
9 K A -1.9432
10 G A 0.0000
11 D A -2.7687
12 G A -1.7736
13 P A -1.7499
14 V A 0.0000
15 Q A -2.0714
16 G A -0.8801
17 I A 0.5118
18 I A 0.0000
19 N A -0.1971
20 F A 0.0000
21 E A -2.1642
22 Q A 0.0000
23 K A -3.2890
24 E A -3.2235
25 S A -2.2391
26 N A -2.2523
27 G A -1.7202
28 P A -1.8249
29 V A 0.0000
30 K A -2.4309
31 V A 0.0000
32 W A -0.5679
33 G A -0.2425
34 S A -1.0688
35 I A 0.0000
36 K A -2.6035
37 G A -1.9962
38 L A 0.0000
39 T A -2.0325
40 E A -3.2164
41 G A -1.4401
42 L A -0.0466
43 H A 0.0000
44 G A 0.0000
45 F A 0.0000
46 H A 0.0000
47 V A 0.0000
48 H A -0.0779
49 E A -0.2860
50 F A 0.6465
51 G A -0.6439
52 D A -2.1004
53 N A -1.9546
54 T A -1.3678
55 A A -1.0255
56 G A -1.4165
57 C A -1.1947
58 T A -0.7152
59 S A -0.4742
60 A A 0.0000
61 G A -0.2665
62 P A -0.2878
63 H A -0.6225
64 F A 0.0000
65 N A -0.9962
66 P A 0.0000
67 L A -0.3928
68 S A -1.8491
69 R A -3.1401
70 K A -3.1268
71 H A -2.5156
72 G A -1.7831
73 G A -1.3901
74 P A -2.4383
75 K A -3.9536
76 D A -4.3823
77 E A -3.7723
78 E A -3.7971
79 R A -3.4894
80 H A -1.7021
81 V A 0.3705
82 G A 0.1484
83 D A -0.4780
84 L A 0.0000
85 G A -0.5632
86 N A -0.3824
87 V A 0.0000
88 T A -0.7286
89 A A 0.0000
90 D A -4.1625
91 K A -4.0649
92 D A -3.7562
93 G A -2.9252
94 V A -2.8524
95 A A 0.0000
96 D A -2.1799
97 V A 0.0000
98 S A -0.9207
99 I A -1.1885
100 E A -2.8550
101 D A -2.6388
102 S A -0.7901
103 V A 1.0459
104 I A 0.0000
105 S A 0.0000
106 L A 0.0000
107 S A -1.3068
108 G A -1.7095
109 D A -2.3701
110 H A -1.4759
111 C A -0.8111
112 I A 0.0000
113 T A 0.2591
114 G A 0.0257
115 R A -0.2664
116 T A 0.0000
117 L A 0.0000
118 V A 0.0000
119 V A 0.0000
120 H A -1.5562
121 E A -1.9876
122 K A -2.5351
123 A A -1.2947
124 D A -1.5546
125 D A -1.9412
126 L A 0.1078
127 G A -1.2057
128 K A -2.3378
129 G A -2.3374
130 G A -3.7548
131 N A -3.3514
132 E A -3.6245
133 E A -3.2042
134 S A -2.1031
135 T A -2.0864
136 K A 0.0000
137 T A -2.8208
138 G A -2.1813
139 N A -2.4123
140 A A -1.8553
141 G A -1.7870
142 S A -1.7514
143 R A -2.5071
144 L A -1.9619
145 A A 0.0000
146 C A -0.7668
147 G A -0.0401
148 V A 0.5819
149 I A 0.0000
150 G A 0.9023
151 I A 1.4502
152 A A 0.0282
153 Q A -0.9108
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Laboratory of Theory of Biopolymers 2018