Project name: query_structure

Status: done

Started: 2026-03-17 01:02:21
Settings
Chain sequence(s) A: GGVCPKILQRCRRDSDCPGACICRGNGYCGSGSD
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:19)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:20)
Show buried residues

Minimal score value
-4.1902
Maximal score value
1.5313
Average score
-1.0154
Total score value
-34.5228

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.9096
2 G A 0.2265
3 V A 1.2906
4 C A 0.8319
5 P A -0.0517
6 K A -0.4316
7 I A 1.5313
8 L A 1.3519
9 Q A -0.4269
10 R A -2.5526
11 C A -3.0659
12 R A -3.8606
13 R A -4.1902
14 D A -3.3684
15 S A -2.2501
16 D A -2.9574
17 C A 0.0000
18 P A -0.5589
19 G A -0.0734
20 A A 0.4084
21 C A 0.0000
22 I A -0.5654
23 C A -2.3969
24 R A -2.7027
25 G A -1.8303
26 N A -2.0895
27 G A -2.3193
28 Y A -1.2841
29 C A 0.0000
30 G A -0.8771
31 S A -0.2006
32 G A 0.3245
33 S A 0.0345
34 D A -1.5592
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Laboratory of Theory of Biopolymers 2018