| Chain sequence(s) |
A: GGVCPKILQRCRRDSDCPGACICRGNGYCGSGSD
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:19)
[INFO] Main: Simulation completed successfully. (00:00:20)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -0.9096 | |
| 2 | G | A | 0.2265 | |
| 3 | V | A | 1.2906 | |
| 4 | C | A | 0.8319 | |
| 5 | P | A | -0.0517 | |
| 6 | K | A | -0.4316 | |
| 7 | I | A | 1.5313 | |
| 8 | L | A | 1.3519 | |
| 9 | Q | A | -0.4269 | |
| 10 | R | A | -2.5526 | |
| 11 | C | A | -3.0659 | |
| 12 | R | A | -3.8606 | |
| 13 | R | A | -4.1902 | |
| 14 | D | A | -3.3684 | |
| 15 | S | A | -2.2501 | |
| 16 | D | A | -2.9574 | |
| 17 | C | A | 0.0000 | |
| 18 | P | A | -0.5589 | |
| 19 | G | A | -0.0734 | |
| 20 | A | A | 0.4084 | |
| 21 | C | A | 0.0000 | |
| 22 | I | A | -0.5654 | |
| 23 | C | A | -2.3969 | |
| 24 | R | A | -2.7027 | |
| 25 | G | A | -1.8303 | |
| 26 | N | A | -2.0895 | |
| 27 | G | A | -2.3193 | |
| 28 | Y | A | -1.2841 | |
| 29 | C | A | 0.0000 | |
| 30 | G | A | -0.8771 | |
| 31 | S | A | -0.2006 | |
| 32 | G | A | 0.3245 | |
| 33 | S | A | 0.0345 | |
| 34 | D | A | -1.5592 |