| Chain sequence(s) |
H: VQLVQSGAEVKKPGASVTVSCKASGYTFTDYYMHWVRQAPGQGLEWMGWIKPNSGGTNSAQRFQGRITMTWDTSISTAYMELSRLRSDDTAVYYCSRGGPVMNYYYYYGMDVWGQGTTVTVSSASTKGPSVFPLAPCTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRV
L: NIQMTQSPSSLSASVGDRVTITCRASQSIDSYLNWYQQKPGKAPKLLIYVASSLQSGVPSRFSGSGSGKDFTLTISSLQPEDFATYYCQQSYSIPTFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:04:03)
[INFO] Main: Simulation completed successfully. (00:04:06)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 2 | V | H | 1.0925 | |
| 3 | Q | H | -0.2652 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.4984 | |
| 6 | Q | H | -0.0638 | |
| 7 | S | H | -0.5338 | |
| 8 | G | H | -0.8009 | |
| 9 | A | H | -0.8110 | |
| 10 | E | H | -1.6479 | |
| 11 | V | H | -0.8022 | |
| 12 | K | H | -1.6192 | |
| 13 | K | H | -2.2965 | |
| 14 | P | H | -2.2737 | |
| 15 | G | H | -2.0555 | |
| 16 | A | H | -1.4677 | |
| 17 | S | H | -1.1017 | |
| 18 | V | H | 0.0000 | |
| 19 | T | H | -0.5226 | |
| 20 | V | H | 0.0000 | |
| 21 | S | H | -0.0507 | |
| 22 | C | H | 0.0000 | |
| 23 | K | H | -0.1885 | |
| 24 | A | H | 0.0000 | |
| 25 | S | H | 0.0731 | |
| 26 | G | H | -0.1882 | |
| 27 | Y | H | 0.0705 | |
| 28 | T | H | -0.2204 | |
| 29 | F | H | 0.0000 | |
| 30 | T | H | -1.0154 | |
| 31 | D | H | -1.0577 | |
| 32 | Y | H | -0.1043 | |
| 33 | Y | H | 0.0000 | |
| 34 | M | H | 0.0000 | |
| 35 | H | H | 0.0000 | |
| 36 | W | H | 0.0000 | |
| 37 | V | H | 0.0000 | |
| 38 | R | H | 0.0000 | |
| 39 | Q | H | -0.5094 | |
| 40 | A | H | -0.9662 | |
| 41 | P | H | -0.7966 | |
| 42 | G | H | -1.2265 | |
| 43 | Q | H | -1.7976 | |
| 44 | G | H | -1.2217 | |
| 45 | L | H | 0.0000 | |
| 46 | E | H | -0.4105 | |
| 47 | W | H | 0.0000 | |
| 48 | M | H | 0.0000 | |
| 49 | G | H | 0.0000 | |
| 50 | W | H | -0.0072 | |
| 51 | I | H | 0.0000 | |
| 52 | K | H | -0.8080 | |
| 53 | P | H | 0.0000 | |
| 54 | N | H | -1.6524 | |
| 55 | S | H | -1.1424 | |
| 56 | G | H | -1.0751 | |
| 57 | G | H | -0.8299 | |
| 58 | T | H | -0.5362 | |
| 59 | N | H | -0.8058 | |
| 60 | S | H | -1.2211 | |
| 61 | A | H | 0.0000 | |
| 62 | Q | H | -2.5590 | |
| 63 | R | H | -2.8995 | |
| 64 | F | H | 0.0000 | |
| 65 | Q | H | -2.4691 | |
| 66 | G | H | -2.0309 | |
| 67 | R | H | -1.6404 | |
| 68 | I | H | 0.0000 | |
| 69 | T | H | -0.5894 | |
| 70 | M | H | 0.0000 | |
| 71 | T | H | -0.1428 | |
| 72 | W | H | 0.0366 | |
| 73 | D | H | -0.1906 | |
| 74 | T | H | -0.0455 | |
| 75 | S | H | 0.4272 | |
| 76 | I | H | 1.3704 | |
| 77 | S | H | 0.3489 | |
| 78 | T | H | 0.0000 | |
| 79 | A | H | 0.0000 | |
| 80 | Y | H | 0.0423 | |
| 81 | M | H | 0.0000 | |
| 82 | E | H | -0.6691 | |
| 83 | L | H | 0.0000 | |
| 84 | S | H | -1.5307 | |
| 85 | R | H | -2.4782 | |
| 86 | L | H | 0.0000 | |
| 87 | R | H | -2.7147 | |
| 88 | S | H | -1.9769 | |
| 89 | D | H | -2.2968 | |
| 90 | D | H | 0.0000 | |
| 91 | T | H | -0.7293 | |
| 92 | A | H | 0.0000 | |
| 93 | V | H | 0.1844 | |
| 94 | Y | H | 0.0000 | |
| 95 | Y | H | 0.0000 | |
| 96 | C | H | 0.0000 | |
| 97 | S | H | 0.0000 | |
| 98 | R | H | -0.0251 | |
| 99 | G | H | 0.0000 | |
| 100 | G | H | 0.0000 | |
| 101 | P | H | 0.6421 | |
| 102 | V | H | 0.5759 | |
| 103 | M | H | 0.9227 | |
| 104 | N | H | 0.9080 | |
| 105 | Y | H | 1.9178 | |
| 106 | Y | H | 1.7692 | |
| 107 | Y | H | 2.0216 | |
| 108 | Y | H | 1.7864 | |
| 109 | Y | H | 1.1966 | |
| 110 | G | H | 0.0000 | |
| 111 | M | H | 0.0000 | |
| 112 | D | H | -0.7133 | |
| 113 | V | H | 0.0113 | |
| 114 | W | H | -0.3785 | |
| 115 | G | H | 0.0000 | |
| 116 | Q | H | -1.4202 | |
| 117 | G | H | -0.7601 | |
| 118 | T | H | 0.0000 | |
| 119 | T | H | -0.2639 | |
| 120 | V | H | 0.0000 | |
| 121 | T | H | -0.9754 | |
| 122 | V | H | 0.0000 | |
| 123 | S | H | -1.2349 | |
| 124 | S | H | -1.0402 | |
| 125 | A | H | -0.7355 | |
| 126 | S | H | -0.9250 | |
| 127 | T | H | -1.0253 | |
| 128 | K | H | -1.7403 | |
| 129 | G | H | -1.6778 | |
| 130 | P | H | -0.8274 | |
| 131 | S | H | -0.4173 | |
| 132 | V | H | 0.0000 | |
| 133 | F | H | -0.5464 | |
| 134 | P | H | -0.5706 | |
| 135 | L | H | 0.0000 | |
| 136 | A | H | 0.2796 | |
| 137 | P | H | 0.4165 | |
| 138 | C | H | 0.5971 | |
| 146 | T | H | -0.0419 | |
| 147 | A | H | 0.3249 | |
| 148 | A | H | 0.0000 | |
| 149 | L | H | 0.4557 | |
| 150 | G | H | 0.0000 | |
| 151 | C | H | 0.0000 | |
| 152 | L | H | 0.0000 | |
| 153 | V | H | 0.0000 | |
| 154 | K | H | -0.3868 | |
| 155 | D | H | -0.6041 | |
| 156 | Y | H | 0.0000 | |
| 157 | F | H | 0.0000 | |
| 158 | P | H | -0.9953 | |
| 159 | E | H | -1.4211 | |
| 160 | P | H | -1.1456 | |
| 161 | V | H | -0.1497 | |
| 162 | T | H | 0.2355 | |
| 163 | V | H | 1.4259 | |
| 164 | S | H | 0.6459 | |
| 165 | W | H | -0.1386 | |
| 166 | N | H | -0.3357 | |
| 167 | S | H | -0.0745 | |
| 168 | G | H | -0.1585 | |
| 169 | A | H | -0.1449 | |
| 170 | L | H | 0.1971 | |
| 171 | T | H | 0.0428 | |
| 172 | S | H | -0.2694 | |
| 173 | G | H | -0.5169 | |
| 174 | V | H | 0.3106 | |
| 175 | H | H | -0.3261 | |
| 176 | T | H | 0.0463 | |
| 177 | F | H | 0.0000 | |
| 178 | P | H | -0.0719 | |
| 179 | A | H | 0.3564 | |
| 180 | V | H | 0.7748 | |
| 181 | L | H | 1.5211 | |
| 182 | Q | H | 0.3402 | |
| 183 | S | H | -0.0526 | |
| 184 | S | H | -0.2006 | |
| 185 | G | H | 0.0652 | |
| 186 | L | H | 0.0010 | |
| 187 | Y | H | 0.3935 | |
| 188 | S | H | 0.0000 | |
| 189 | L | H | 0.3771 | |
| 190 | S | H | 0.0321 | |
| 191 | S | H | 0.0000 | |
| 192 | V | H | 0.0000 | |
| 193 | V | H | 0.5178 | |
| 194 | T | H | 0.3528 | |
| 195 | V | H | 0.2295 | |
| 196 | P | H | -0.1848 | |
| 197 | S | H | -0.2298 | |
| 198 | S | H | -0.2974 | |
| 199 | S | H | -0.3479 | |
| 200 | L | H | 0.0052 | |
| 201 | G | H | -0.5484 | |
| 202 | T | H | -0.5841 | |
| 203 | K | H | -0.8593 | |
| 204 | T | H | -0.6730 | |
| 205 | Y | H | -0.4302 | |
| 206 | T | H | -1.2295 | |
| 207 | C | H | 0.0000 | |
| 208 | N | H | -1.4502 | |
| 209 | V | H | 0.0000 | |
| 210 | D | H | -2.1506 | |
| 211 | H | H | 0.0000 | |
| 212 | K | H | -2.8406 | |
| 213 | P | H | -1.8640 | |
| 214 | S | H | -2.0237 | |
| 215 | N | H | -2.7222 | |
| 216 | T | H | -2.2613 | |
| 217 | K | H | -2.9426 | |
| 218 | V | H | -1.9859 | |
| 219 | D | H | -2.8215 | |
| 220 | K | H | -2.1532 | |
| 221 | R | H | -2.0818 | |
| 222 | V | H | -0.7305 | |
| 1 | N | L | -1.6357 | |
| 2 | I | L | 0.0000 | |
| 3 | Q | L | -1.9383 | |
| 4 | M | L | -1.4353 | |
| 5 | T | L | -1.2222 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.6301 | |
| 8 | P | L | -0.5383 | |
| 9 | S | L | -0.9357 | |
| 10 | S | L | -0.9115 | |
| 11 | L | L | -0.5597 | |
| 12 | S | L | -0.8487 | |
| 13 | A | L | -0.7227 | |
| 14 | S | L | -0.5319 | |
| 15 | V | L | 0.6455 | |
| 16 | G | L | -0.6565 | |
| 17 | D | L | -1.5481 | |
| 18 | R | L | -2.2764 | |
| 19 | V | L | 0.0000 | |
| 20 | T | L | -0.5144 | |
| 21 | I | L | 0.0000 | |
| 22 | T | L | -0.7842 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.5175 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -1.7843 | |
| 27 | Q | L | -2.1934 | |
| 28 | S | L | -1.7171 | |
| 29 | I | L | 0.0000 | |
| 30 | D | L | -1.9517 | |
| 31 | S | L | -0.7686 | |
| 32 | Y | L | 0.4066 | |
| 33 | L | L | 0.0000 | |
| 34 | N | L | 0.0000 | |
| 35 | W | L | 0.0000 | |
| 36 | Y | L | 0.0000 | |
| 37 | Q | L | 0.0000 | |
| 38 | Q | L | -1.3089 | |
| 39 | K | L | -1.5647 | |
| 40 | P | L | -1.4745 | |
| 41 | G | L | -1.6910 | |
| 42 | K | L | -2.5456 | |
| 43 | A | L | -1.5844 | |
| 44 | P | L | 0.0000 | |
| 45 | K | L | -1.5153 | |
| 46 | L | L | 0.0000 | |
| 47 | L | L | 0.0000 | |
| 48 | I | L | 0.0000 | |
| 49 | Y | L | 0.6589 | |
| 50 | V | L | 0.4901 | |
| 51 | A | L | 0.0000 | |
| 52 | S | L | -0.1311 | |
| 53 | S | L | 0.1976 | |
| 54 | L | L | 0.4190 | |
| 55 | Q | L | -0.1392 | |
| 56 | S | L | -0.4789 | |
| 57 | G | L | -0.5073 | |
| 58 | V | L | -0.3203 | |
| 59 | P | L | -0.3344 | |
| 60 | S | L | -0.4517 | |
| 61 | R | L | -0.8662 | |
| 62 | F | L | 0.0000 | |
| 63 | S | L | -0.3496 | |
| 64 | G | L | -0.1856 | |
| 65 | S | L | -0.6463 | |
| 66 | G | L | -1.4515 | |
| 67 | S | L | -1.8258 | |
| 68 | G | L | -2.1180 | |
| 69 | K | L | -2.7852 | |
| 70 | D | L | -2.7397 | |
| 71 | F | L | 0.0000 | |
| 72 | T | L | -0.7593 | |
| 73 | L | L | 0.0000 | |
| 74 | T | L | -0.6323 | |
| 75 | I | L | 0.0000 | |
| 76 | S | L | -1.5257 | |
| 77 | S | L | -1.1329 | |
| 78 | L | L | 0.0000 | |
| 79 | Q | L | -0.7466 | |
| 80 | P | L | -0.7378 | |
| 81 | E | L | -1.5071 | |
| 82 | D | L | 0.0000 | |
| 83 | F | L | -0.4472 | |
| 84 | A | L | 0.0000 | |
| 85 | T | L | -0.9745 | |
| 86 | Y | L | 0.0000 | |
| 87 | Y | L | 0.0000 | |
| 88 | C | L | 0.0000 | |
| 89 | Q | L | 0.0000 | |
| 90 | Q | L | 0.0000 | |
| 91 | S | L | 0.0000 | |
| 92 | Y | L | 1.3237 | |
| 93 | S | L | 0.6820 | |
| 94 | I | L | 0.1876 | |
| 95 | P | L | 0.3013 | |
| 96 | T | L | -0.2913 | |
| 97 | F | L | -0.3274 | |
| 98 | G | L | -0.9120 | |
| 99 | Q | L | -1.7515 | |
| 100 | G | L | 0.0000 | |
| 101 | T | L | 0.0000 | |
| 102 | R | L | -1.9904 | |
| 103 | L | L | 0.0000 | |
| 104 | E | L | -1.0844 | |
| 105 | I | L | -0.6203 | |
| 106 | K | L | -1.5554 | |
| 107 | R | L | -1.2132 | |
| 108 | T | L | 0.0671 | |
| 109 | V | L | 1.1774 | |
| 110 | A | L | 0.4225 | |
| 111 | A | L | 0.0377 | |
| 112 | P | L | -0.0355 | |
| 113 | S | L | -0.1348 | |
| 114 | V | L | 0.1288 | |
| 115 | F | L | 0.3828 | |
| 116 | I | L | 0.4265 | |
| 117 | F | L | 0.0000 | |
| 118 | P | L | 0.0000 | |
| 119 | P | L | -0.3258 | |
| 120 | S | L | -1.1687 | |
| 121 | D | L | -2.5475 | |
| 122 | E | L | -2.3300 | |
| 123 | Q | L | 0.0000 | |
| 124 | L | L | -1.9553 | |
| 125 | K | L | -2.6964 | |
| 126 | S | L | -1.7195 | |
| 127 | G | L | -1.4867 | |
| 128 | T | L | -1.1670 | |
| 129 | A | L | 0.0000 | |
| 130 | S | L | 0.0000 | |
| 131 | V | L | 0.0000 | |
| 132 | V | L | 0.0655 | |
| 133 | C | L | 0.0000 | |
| 134 | L | L | 0.0000 | |
| 135 | L | L | 0.0000 | |
| 136 | N | L | -0.4657 | |
| 137 | N | L | -1.3117 | |
| 138 | F | L | 0.0000 | |
| 139 | Y | L | 0.0000 | |
| 140 | P | L | -1.6587 | |
| 141 | R | L | -3.2654 | |
| 142 | E | L | -3.1658 | |
| 143 | A | L | -2.2563 | |
| 144 | K | L | -2.4080 | |
| 145 | V | L | -1.0533 | |
| 146 | Q | L | -1.1662 | |
| 147 | W | L | 0.0000 | |
| 148 | K | L | -0.9513 | |
| 149 | V | L | 0.0000 | |
| 150 | D | L | -1.4038 | |
| 151 | N | L | -1.2918 | |
| 152 | A | L | -0.4240 | |
| 153 | L | L | 0.4197 | |
| 154 | Q | L | -0.5720 | |
| 155 | S | L | -0.7667 | |
| 156 | G | L | -1.0669 | |
| 157 | N | L | -1.0523 | |
| 158 | S | L | -1.2997 | |
| 159 | Q | L | -1.2704 | |
| 160 | E | L | -1.8155 | |
| 161 | S | L | -0.7780 | |
| 162 | V | L | -0.8036 | |
| 163 | T | L | -1.1717 | |
| 164 | E | L | -2.3757 | |
| 165 | Q | L | -2.2022 | |
| 166 | D | L | -2.2999 | |
| 167 | S | L | -1.8458 | |
| 168 | K | L | -2.4259 | |
| 169 | D | L | -2.0256 | |
| 170 | S | L | -1.9851 | |
| 171 | T | L | 0.0000 | |
| 172 | Y | L | 0.0000 | |
| 173 | S | L | 0.0000 | |
| 174 | L | L | 0.0000 | |
| 175 | S | L | -0.3422 | |
| 176 | S | L | 0.0000 | |
| 177 | T | L | 0.0000 | |
| 178 | L | L | 0.0000 | |
| 179 | T | L | -0.2848 | |
| 180 | L | L | -0.7064 | |
| 181 | S | L | -1.3247 | |
| 182 | K | L | -2.2174 | |
| 183 | A | L | -2.0246 | |
| 184 | D | L | -3.0284 | |
| 185 | Y | L | -2.6683 | |
| 186 | E | L | -3.4859 | |
| 187 | K | L | -3.3726 | |
| 188 | H | L | -2.8216 | |
| 189 | K | L | -2.8390 | |
| 190 | V | L | -1.0123 | |
| 191 | Y | L | 0.0000 | |
| 192 | A | L | 0.0000 | |
| 193 | C | L | 0.0000 | |
| 194 | E | L | -0.9175 | |
| 195 | V | L | 0.0000 | |
| 196 | T | L | -1.1559 | |
| 197 | H | L | 0.0000 | |
| 198 | Q | L | -1.7444 | |
| 199 | G | L | -0.3039 | |
| 200 | L | L | -0.1687 | |
| 201 | S | L | -0.4601 | |
| 202 | S | L | -0.3855 | |
| 203 | P | L | -0.4014 | |
| 204 | V | L | 0.1966 | |
| 205 | T | L | -0.4695 | |
| 206 | K | L | -0.7041 | |
| 207 | S | L | -0.4754 | |
| 208 | F | L | 0.0000 | |
| 209 | N | L | -1.3029 | |
| 210 | R | L | -1.8242 | |
| 211 | G | L | -1.9122 | |
| 212 | E | L | -2.0264 | |
| 213 | C | L | -0.5754 |