Project name: Amrita [mutate: WF3A, WF3B]

Status: done

Started: 2026-05-21 06:54:50
Settings
Chain sequence(s) A: KDWSFY
B: KDWSFY
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues WF3A,WF3B
Energy difference between WT (input) and mutated protein (by FoldX) 1.14406 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:07)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:17)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:25)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:26)
Show buried residues

Minimal score value
-1.3328
Maximal score value
2.4672
Average score
0.9573
Total score value
11.487

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -1.3328
2 D A -0.8696
3 F A 2.2670 mutated: WF3A
4 S A 1.9578
5 F A 2.4672
6 Y A 1.2771
1 K B -1.3033
2 D B -0.8009
3 F B 2.3116 mutated: WF3B
4 S B 2.1049
5 F B 2.2856
6 Y B 1.1224
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Laboratory of Theory of Biopolymers 2018