Project name: istopp

Status: done

Started: 2024-06-11 13:50:06
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Chain sequence(s) B: FGKRPTDLALSVILVFMLGGGGGGGGRLKNIGGGGGGYDGDLKDKVPYKGIVISLVLVGGGGGGNVQLCSTILNVAFPPEVIGPLFFFPLLYM
input PDB
Selected Chain(s) B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with B chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:38)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:38)
Show buried residues

Minimal score value
-2.2354
Maximal score value
4.7628
Average score
0.7568
Total score value
70.3817

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 F B 0.9937
2 G B -0.4997
3 K B -2.0419
4 R B -2.2354
5 P B -1.0775
6 T B -0.1617
7 D B 0.2126
8 L B 1.4512
9 A B 1.6872
10 L B 2.9646
11 S B 2.8533
12 V B 3.8817
13 I B 4.4932
14 L B 4.4373
15 V B 4.7628
16 F B 4.5310
17 M B 3.4434
18 L B 3.3399
19 G B 1.8363
20 G B 0.4147
21 G B -0.2716
22 G B -0.6675
23 G B -0.9779
24 G B -1.3132
25 G B -1.2209
26 G B -1.0478
27 R B -0.5978
28 L B 0.0854
29 K B -1.4378
30 N B -0.6252
31 I B -0.0679
32 G B -0.9081
33 G B -0.9377
34 G B -0.9979
35 G B -1.0296
36 G B -1.0019
37 G B -0.7009
38 Y B -0.2896
39 D B -1.6988
40 G B -1.8942
41 D B -2.1706
42 L B -0.6755
43 K B -1.7988
44 D B -2.1352
45 K B -1.4647
46 V B 0.5839
47 P B 0.6013
48 Y B 1.2338
49 K B 0.0627
50 G B 1.0439
51 I B 2.6510
52 V B 2.5404
53 I B 2.6240
54 S B 2.4666
55 L B 3.2568
56 V B 3.3978
57 L B 3.3184
58 V B 2.5095
59 G B 0.9597
60 G B -0.3963
61 G B -0.6747
62 G B -1.4910
63 G B -1.0035
64 G B -0.0534
65 N B 1.0163
66 V B 1.6513
67 Q B -0.1025
68 L B 0.5062
69 C B 1.3858
70 S B -0.0341
71 T B -0.6419
72 I B 0.3913
73 L B 0.4844
74 N B -0.6882
75 V B 0.0728
76 A B 0.7558
77 F B 1.5376
78 P B 0.7292
79 P B 0.0403
80 E B -0.6916
81 V B 0.0000
82 I B 1.9330
83 G B 0.9412
84 P B 1.5578
85 L B 2.3124
86 F B 3.5962
87 F B 3.2815
88 F B 3.1970
89 P B 3.0077
90 L B 3.3363
91 L B 2.8262
92 Y B 2.9643
93 M B 1.9435
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Laboratory of Theory of Biopolymers 2018