Project name: efe670b713087dc

Status: done

Started: 2024-06-17 09:28:33
Settings
Chain sequence(s) A: EVQLVESGGGLVQPGGSLRLSCAASGRTLRFSAYGMGWFRQAPGKGLELVSAISQWGVGNTYYADSVKGRFTISRDNAKNTLYLQMNSLRAEDTAVYVCAADTSPVTWYPADGYHYDAWGQGTLVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:42)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:44)
Show buried residues

Minimal score value
-2.5614
Maximal score value
1.7355
Average score
-0.3935
Total score value
-50.758

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E A -1.6132
2 V A -0.2235
3 Q A -0.8809
4 L A 0.0000
5 V A 0.7588
6 E A 0.3012
7 S A -0.2629
8 G A -0.7068
9 G A 0.2145
10 G A 0.9297
11 L A 1.5160
12 V A 0.0088
13 Q A -1.2858
14 P A -1.2967
15 G A -1.3266
16 G A -1.0782
17 S A -1.0858
18 L A -0.7454
19 R A -1.6284
20 L A 0.0000
21 S A -0.3054
22 C A 0.0000
23 A A -0.0966
24 A A -0.4030
25 S A -0.9135
26 G A -1.3454
27 R A -1.6182
28 T A -1.0536
29 L A 0.0000
30 R A -0.6045
31 F A 1.1988
32 S A 0.7476
33 A A 0.5427
34 Y A 0.0000
35 G A 0.0000
35A M A 0.0000
35B G A 0.0000
36 W A 0.0000
37 F A 0.0000
38 R A 0.0000
39 Q A -0.8584
40 A A -1.1638
41 P A -1.1424
42 G A -1.6407
43 K A -2.2816
44 G A -1.2795
45 L A -0.2776
46 E A -0.8353
47 L A 0.0000
48 V A 0.0000
49 S A 0.0000
50 A A 0.0000
51 I A 0.0000
52 S A 0.0000
52A Q A 0.0000
52B W A 1.0871
53 G A 0.5564
54 V A 1.3496
55 G A 0.1131
56 N A -0.0665
57 T A 0.1966
58 Y A 0.1089
59 Y A -0.7401
60 A A -1.3181
61 D A -2.4649
62 S A -1.7674
63 V A 0.0000
64 K A -2.5614
65 G A -1.7510
66 R A -1.5215
67 F A 0.0000
68 T A -0.7243
69 I A 0.0000
70 S A 0.0692
71 R A 0.0000
72 D A -0.6547
73 N A -0.7050
74 A A -1.0738
75 K A -1.9896
76 N A -1.5385
77 T A -0.5163
78 L A 0.0000
79 Y A -0.2895
80 L A 0.0000
81 Q A -1.0224
82 M A 0.0000
82A N A -1.2085
82B S A -1.1188
82C L A 0.0000
83 R A -2.1511
84 A A -1.4838
85 E A -2.1741
86 D A 0.0000
87 T A -0.3496
88 A A 0.0000
89 V A 1.0735
90 Y A 0.0000
91 V A 0.4524
92 C A 0.0000
93 A A 0.0000
94 A A 0.0000
95 D A -0.9621
96 T A -0.4020
97 S A -0.0565
98 P A 0.1801
99 V A 1.1494
100 T A 0.4084
100A W A 0.5216
100B Y A 0.3361
100C P A -0.2376
100D A A -0.6272
100E D A -1.5298
100F G A -0.7628
100G Y A -0.0225
100H H A -1.2439
100I Y A 0.0000
101 D A -1.8374
102 A A -0.7982
103 W A -0.1334
104 G A -0.0734
105 Q A -0.7583
106 G A 0.0709
107 T A 0.6693
108 L A 1.7355
109 V A 0.0000
110 T A 0.4739
111 V A 0.0000
112 S A -0.4731
113 S A -0.4653
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018