Project name: RVAC_29_03_2026 [mutate: YH5A] [mutate: LM15A] [mutate: TD16A] [mutate: VI54A] [mutate: YK55A] [mutate: YK72A] [mutate: LN102A] [mutate: IV108A] [mutate: TS109A] [mutate: LM110A] [mutate: YF111A] [mutate: YQ112A] [mutate: FK111A] [mutate: VM168A] [mutate: LR207A] [mutate: IV206A] [mutate: VA206A] [mutate: YH235A] [mutate: VI247A] [mutate: LI255A] [mutate: IV255A]

Status: done

Started: 2026-04-03 12:10:12
Settings
Chain sequence(s) A: MDTPHANSTQEEPFMDSTLCLYYPTEAATEINDTEWKDTLSQLFLTKGWPTGSIKFKEYTDIASFSVDPQLKCDYNIVLMKYDSNLELDMSELADLILNEWNCNPMDVSMKQYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGCLTTDTNTFEEVATAEKLVITDVMDGVNHKLDVTTNTCTIRNCKKLGPRENVAVIQVGGSNARDITADPTTAPQTERMMRINWKKWWQVFHTVVDYVNQIVQIMSKRSRSINSAAFYYRV
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues IV255A
Energy difference between WT (input) and mutated protein (by FoldX) 0.521647 kcal/mol
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:01:05)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:01:10)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:15)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:16)
Show buried residues

Minimal score value
-3.2558
Maximal score value
2.6181
Average score
-0.822
Total score value
-217.0078

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.1615
2 D A -1.5207
3 T A -1.0356
4 P A -1.3048
5 H A -1.7371
6 A A -1.1988
7 N A -1.8904
8 S A -1.7193
9 T A -2.0739
10 Q A -3.0302
11 E A -3.2558
12 E A -3.1823
13 P A -2.2026
14 F A -1.1827
15 M A -0.7650
16 D A -1.6582
17 S A 0.0000
18 T A -1.0353
19 L A 0.0000
20 C A 0.0000
21 L A 0.0000
22 Y A 0.0000
23 Y A 0.0000
24 P A 0.0000
25 T A -0.8448
26 E A -1.0671
27 A A 0.0000
28 A A -0.9842
29 T A -1.1035
30 E A -1.3335
31 I A 0.0000
32 N A -2.0777
33 D A -2.0622
34 T A -1.9614
35 E A -3.0318
36 W A 0.0000
37 K A -2.3599
38 D A -2.9769
39 T A -1.9046
40 L A 0.0000
41 S A -1.6381
42 Q A -1.4799
43 L A -0.8215
44 F A 0.0000
45 L A -0.1374
46 T A -0.4153
47 K A -0.7007
48 G A -0.3211
49 W A 0.0000
50 P A -0.3891
51 T A -0.7343
52 G A -0.6739
53 S A -0.6726
54 I A 0.0000
55 K A -1.3667
56 F A 0.0000
57 K A -1.4233
58 E A -1.3279
59 Y A 0.0000
60 T A -0.7041
61 D A -0.9049
62 I A 0.0000
63 A A 0.0000
64 S A -0.6103
65 F A 0.0000
66 S A 0.0000
67 V A -0.2848
68 D A -1.8254
69 P A -1.5918
70 Q A -2.1894
71 L A 0.0000
72 K A -2.1723
73 C A 0.0000
74 D A -1.6310
75 Y A 0.0000
76 N A 0.0000
77 I A 0.0000
78 V A 0.0000
79 L A 0.0000
80 M A 0.0000
81 K A -0.7572
82 Y A -1.0025
83 D A -1.5068
84 S A -1.7583
85 N A -1.8595
86 L A -1.7421
87 E A -2.8030
88 L A 0.0000
89 D A -2.4657
90 M A 0.0000
91 S A -1.1515
92 E A -1.1525
93 L A 0.0000
94 A A 0.0000
95 D A -1.2086
96 L A 0.0000
97 I A 0.0000
98 L A -0.8753
99 N A -1.0026
100 E A -1.3185
101 W A -1.7004
102 N A -2.1892
103 C A -1.5795
104 N A -2.0808
105 P A -1.3768
106 M A 0.0000
107 D A -1.6143
108 V A -0.9785
109 S A -0.5452
110 M A -0.0740
111 K A -1.4785
112 Q A -1.6634
113 Y A -1.2278
114 Q A -1.6522
115 Q A 0.0000
116 T A -1.8115
117 D A -2.7722
118 E A -3.0552
119 A A -1.9592
120 N A 0.0000
121 K A -1.9911
122 W A 0.0000
123 I A 0.0000
124 S A 0.0000
125 M A 0.0000
126 G A -0.8269
127 S A -0.8428
128 S A -0.8933
129 C A 0.0000
130 T A -0.6305
131 I A 0.0000
132 K A -1.7817
133 V A 0.0000
134 C A 0.0000
135 P A 0.1843
136 L A 0.0000
137 N A -0.3013
138 T A -0.7633
139 Q A -1.1020
140 T A -0.3427
141 L A 1.0310
142 G A 1.1357
143 I A 1.8620
144 G A 0.6029
145 C A 0.6252
146 L A 1.4723
147 T A 0.6356
148 T A -0.0085
149 D A -0.6052
150 T A -1.3279
151 N A -1.8749
152 T A -1.1657
153 F A 0.0000
154 E A -2.7685
155 E A -2.3668
156 V A -0.6708
157 A A 0.0000
158 T A -0.5474
159 A A -0.5852
160 E A -1.5436
161 K A -1.4934
162 L A 0.0000
163 V A 0.0000
164 I A -0.4379
165 T A 0.0000
166 D A -2.0009
167 V A -1.1109
168 M A -0.8557
169 D A -2.5664
170 G A -1.3769
171 V A -0.8172
172 N A -1.2546
173 H A 0.0000
174 K A -0.9750
175 L A 0.0000
176 D A -1.3514
177 V A 0.0000
178 T A -0.6545
179 T A -0.8274
180 N A -1.3945
181 T A -0.9118
182 C A 0.0000
183 T A -0.6996
184 I A 0.0000
185 R A -1.5456
186 N A -1.7046
187 C A 0.0000
188 K A -2.6130
189 K A -1.8406
190 L A -0.4022
191 G A -0.7924
192 P A -1.1024
193 R A -1.3192
194 E A -2.0274
195 N A -1.3335
196 V A 0.0000
197 A A 0.0000
198 V A 0.0000
199 I A 0.0000
200 Q A 0.0000
201 V A 0.0000
202 G A -1.2117
203 G A -1.3417
204 S A -1.1651
205 N A -1.9647
206 A A -1.5765
207 R A -1.8543
208 D A -2.1972
209 I A -1.4537
210 T A -1.0828
211 A A -1.2383
212 D A -1.9384
213 P A -1.3082
214 T A -0.8703
215 T A -0.8305
216 A A -0.8424
217 P A -1.1279
218 Q A -1.6782
219 T A -1.0525
220 E A -1.3657
221 R A -0.9583
222 M A 0.0000
223 M A -0.5586
224 R A -1.1221
225 I A 0.0000
226 N A -1.8326
227 W A -1.4800
228 K A -2.2427
229 K A -1.8174
230 W A 0.0000
231 W A -0.7730
232 Q A -1.3014
233 V A 0.0000
234 F A 0.0000
235 H A -0.9895
236 T A -0.8302
237 V A 0.0000
238 V A 0.0000
239 D A -1.7046
240 Y A -0.4858
241 V A 0.0000
242 N A -1.0630
243 Q A -0.9315
244 I A -0.3535
245 V A 0.0000
246 Q A -1.0404
247 I A -0.0513
248 M A 0.0000
249 S A -1.3544
250 K A -1.9345
251 R A -2.3017
252 S A -1.6553
253 R A -1.9823
254 S A -1.2997
255 V A 0.4699 mutated: IV255A
256 N A -0.7676
257 S A 0.0186
258 A A 0.5222
259 A A 1.4409
260 F A 2.5826
261 Y A 2.6181
262 Y A 2.0962
263 R A 0.2966
264 V A 1.3961
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018