| Chain sequence(s) |
A: YRGVCFCRKACIKILR
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:23)
[INFO] Main: Simulation completed successfully. (00:00:23)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Y | A | 0.5309 | |
| 2 | R | A | -0.9854 | |
| 3 | G | A | 0.3941 | |
| 4 | V | A | 1.8038 | |
| 5 | C | A | 1.9331 | |
| 6 | F | A | 2.2697 | |
| 7 | C | A | 0.9133 | |
| 8 | R | A | -1.2566 | |
| 9 | K | A | -1.6027 | |
| 10 | A | A | 0.1248 | |
| 11 | C | A | 1.0488 | |
| 12 | I | A | 0.5103 | |
| 13 | K | A | -0.7140 | |
| 14 | I | A | 1.5676 | |
| 15 | L | A | 1.6256 | |
| 16 | R | A | -0.5829 |