Project name: query_structure

Status: done

Started: 2026-03-16 19:54:56
Settings
Chain sequence(s) A: CKRKGSSCRRTSYDCCTGSCRNGKC
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:19)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:20)
Show buried residues

Minimal score value
-4.1914
Maximal score value
0.538
Average score
-2.0358
Total score value
-50.8951

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 C A 0.2983
2 K A -1.8037
3 R A -3.0434
4 K A -3.1767
5 G A -2.2831
6 S A -2.0298
7 S A -2.7268
8 C A 0.0000
9 R A -3.6238
10 R A -3.7788
11 T A -1.4542
12 S A -0.7036
13 Y A 0.5380
14 D A -0.6824
15 C A -0.8579
16 C A 0.1155
17 T A -0.7221
18 G A -1.6273
19 S A -1.8470
20 C A -3.1865
21 R A -3.9412
22 N A -3.4491
23 G A -3.4126
24 K A -4.1914
25 C A -3.3055
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Laboratory of Theory of Biopolymers 2018