| Chain sequence(s) |
A: LVFFAEDVGSNKGAIIGLMVGGVVIA
C: LVFFAEDVGSNKGAIIGLMVGGVVIA B: LVFFAEDVGSNKGAIIGLMVGGVVIA E: LVFFAEDVGSNKGAIIGLMVGGVVIA D: LVFFAEDVGSNKGAIIGLMVGGVVIA input PDB |
| Selected Chain(s) | A,C,B,E,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:09)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:09)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:09)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:09)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:09)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:48)
[INFO] Main: Simulation completed successfully. (00:01:50)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 17 | L | A | 3.1723 | |
| 18 | V | A | 3.1333 | |
| 19 | F | A | 2.4928 | |
| 20 | F | A | 1.8802 | |
| 21 | A | A | 0.2748 | |
| 22 | E | A | -1.1192 | |
| 23 | D | A | -0.7187 | |
| 24 | V | A | 0.2304 | |
| 25 | G | A | -1.0131 | |
| 26 | S | A | -1.3105 | |
| 27 | N | A | -2.4340 | |
| 28 | K | A | -2.3834 | |
| 29 | G | A | -0.5324 | |
| 30 | A | A | 0.9483 | |
| 31 | I | A | 2.8917 | |
| 32 | I | A | 2.5048 | |
| 33 | G | A | 1.8742 | |
| 34 | L | A | 1.7911 | |
| 35 | M | A | 2.2886 | |
| 36 | V | A | 2.1930 | |
| 37 | G | A | 1.1071 | |
| 38 | G | A | 1.0404 | |
| 39 | V | A | 2.2340 | |
| 40 | V | A | 3.0420 | |
| 41 | I | A | 2.9415 | |
| 42 | A | A | 1.5029 | |
| 17 | L | B | 3.4703 | |
| 18 | V | B | 3.2293 | |
| 19 | F | B | 0.0000 | |
| 20 | F | B | 1.1830 | |
| 21 | A | B | 0.0000 | |
| 22 | E | B | -0.6140 | |
| 23 | D | B | 0.0000 | |
| 24 | V | B | 0.5958 | |
| 25 | G | B | 0.0000 | |
| 26 | S | B | -0.9341 | |
| 27 | N | B | -1.9602 | |
| 28 | K | B | 0.0000 | |
| 29 | G | B | 0.0000 | |
| 30 | A | B | 1.4238 | |
| 31 | I | B | 3.0174 | |
| 32 | I | B | 0.0000 | |
| 33 | G | B | 1.4720 | |
| 34 | L | B | 0.0000 | |
| 35 | M | B | 1.4366 | |
| 36 | V | B | 0.0000 | |
| 37 | G | B | 0.7465 | |
| 38 | G | B | 1.0760 | |
| 39 | V | B | 1.7275 | |
| 40 | V | B | 0.0000 | |
| 41 | I | B | 2.4672 | |
| 42 | A | B | 1.3542 | |
| 17 | L | C | 3.3828 | |
| 18 | V | C | 3.0270 | |
| 19 | F | C | 0.0000 | |
| 20 | F | C | 1.4608 | |
| 21 | A | C | 0.0000 | |
| 22 | E | C | -0.6411 | |
| 23 | D | C | 0.0000 | |
| 24 | V | C | 0.8593 | |
| 25 | G | C | 0.0000 | |
| 26 | S | C | -0.6885 | |
| 27 | N | C | -1.7182 | |
| 28 | K | C | 0.0000 | |
| 29 | G | C | 0.4217 | |
| 30 | A | C | 1.5597 | |
| 31 | I | C | 2.9315 | |
| 32 | I | C | 0.0000 | |
| 33 | G | C | 0.8189 | |
| 34 | L | C | 0.0000 | |
| 35 | M | C | 0.9310 | |
| 36 | V | C | 0.0000 | |
| 37 | G | C | 0.4532 | |
| 38 | G | C | 0.0000 | |
| 39 | V | C | 1.5484 | |
| 40 | V | C | 2.4130 | |
| 41 | I | C | 2.1484 | |
| 42 | A | C | 1.1718 | |
| 17 | L | D | 2.8697 | |
| 18 | V | D | 3.3303 | |
| 19 | F | D | 0.0000 | |
| 20 | F | D | 1.7467 | |
| 21 | A | D | 0.2367 | |
| 22 | E | D | -0.8230 | |
| 23 | D | D | 0.0000 | |
| 24 | V | D | 0.1914 | |
| 25 | G | D | 0.0000 | |
| 26 | S | D | -0.6865 | |
| 27 | N | D | -1.4949 | |
| 28 | K | D | 0.0000 | |
| 29 | G | D | 0.5255 | |
| 30 | A | D | 1.5636 | |
| 31 | I | D | 2.7845 | |
| 32 | I | D | 0.0000 | |
| 33 | G | D | 1.0548 | |
| 34 | L | D | 0.0000 | |
| 35 | M | D | 0.9254 | |
| 36 | V | D | 0.0000 | |
| 37 | G | D | 0.8246 | |
| 38 | G | D | 0.0000 | |
| 39 | V | D | 2.0533 | |
| 40 | V | D | 2.7952 | |
| 41 | I | D | 2.7354 | |
| 42 | A | D | 1.4664 | |
| 17 | L | E | 3.3893 | |
| 18 | V | E | 4.0058 | |
| 19 | F | E | 3.5770 | |
| 20 | F | E | 2.7351 | |
| 21 | A | E | 0.2801 | |
| 22 | E | E | -1.7202 | |
| 23 | D | E | -1.4885 | |
| 24 | V | E | 0.3785 | |
| 25 | G | E | -0.3232 | |
| 26 | S | E | -0.6584 | |
| 27 | N | E | -1.6582 | |
| 28 | K | E | -0.3171 | |
| 29 | G | E | 0.4401 | |
| 30 | A | E | 1.2582 | |
| 31 | I | E | 2.7937 | |
| 32 | I | E | 1.6402 | |
| 33 | G | E | 0.8592 | |
| 34 | L | E | 0.5813 | |
| 35 | M | E | 1.2448 | |
| 36 | V | E | 1.0933 | |
| 37 | G | E | 0.6002 | |
| 38 | G | E | 0.0000 | |
| 39 | V | E | 2.7764 | |
| 40 | V | E | 2.7938 | |
| 41 | I | E | 3.2241 | |
| 42 | A | E | 1.6659 |