Project name: f078725e60c4960

Status: done

Started: 2026-04-11 17:23:19
Settings
Chain sequence(s) A: DYVNYDIIVRHYNYTGKLNIAHRSSVSIKLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLSGATTYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITMLKMKLHNGSNNFRLFLLISACWVISLILGGLPIMGWNCISALSSCSTVLPLYHKHYILFCTTVFTLLLLSIVILYCRIYSLVRTRSRRLTFRKLLLSIVILSEKSLALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFRAEYFLVLAVLNSGTNPIIYTLTNKEMRRAFI
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:08)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:08)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:08)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:08)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:08)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:28)
[INFO]       Main:     Simulation completed successfully.                                          (00:05:30)
Show buried residues

Minimal score value
-3.289
Maximal score value
4.0333
Average score
0.288
Total score value
88.1228

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 D A -1.0830
2 Y A 0.6833
3 V A 1.2163
4 N A -0.0793
5 Y A 0.1754
6 D A -1.3666
7 I A 0.0000
8 I A 0.0000
9 V A -0.7605
10 R A -1.5343
11 H A 0.0000
12 Y A 0.0000
13 N A -1.1204
14 Y A 0.2624
15 T A 0.0000
16 G A -0.8439
17 K A -0.3924
18 L A -0.1022
19 N A -0.2204
20 I A 1.0789
21 A A -0.0630
22 H A -1.3529
23 R A -2.0897
24 S A -1.2347
25 S A -0.1881
26 V A 0.4231
27 S A 0.8836
28 I A 1.7446
29 K A 0.3864
30 L A 1.5347
31 T A 1.1000
32 S A 1.5530
33 V A 2.5083
34 V A 2.5228
35 F A 0.0000
36 I A 2.3872
37 L A 2.7350
38 I A 2.5479
39 C A 0.0000
40 C A 2.5132
41 F A 2.9053
42 I A 0.0000
43 I A 2.3436
44 L A 2.1748
45 E A 1.2786
46 N A 0.0000
47 I A 1.9956
48 F A 2.1347
49 V A 0.0000
50 L A 1.3553
51 L A 1.5255
52 T A 0.0000
53 I A 0.0000
54 W A 0.2314
55 K A -1.4488
56 T A -1.8240
57 K A -3.2559
58 K A -3.2890
59 F A 0.0000
60 H A -2.7871
61 R A -3.1317
62 P A -1.3393
63 M A -0.4881
64 Y A 0.0000
65 Y A 0.4542
66 F A 0.0000
67 I A 0.0000
68 G A 0.0000
69 N A 0.0000
70 L A 0.0000
71 A A 0.0000
72 L A 0.9400
73 S A 0.0000
74 D A 0.0000
75 L A 1.5843
76 L A 1.3620
77 A A 0.0000
78 G A 0.0000
79 V A 1.6623
80 A A 0.0000
81 Y A 0.0000
82 T A 1.3081
83 A A 0.9345
84 N A 0.0000
85 L A 1.1712
86 L A 1.5563
87 L A 0.9162
88 S A 0.4202
89 G A -0.0887
90 A A 0.1408
91 T A -0.3427
92 T A 0.0000
93 Y A -0.2369
94 K A -1.3906
95 L A 0.0000
96 T A 0.2285
97 P A 0.0000
98 A A 0.5289
99 Q A 0.0419
100 W A 0.0000
101 F A 0.0000
102 L A 1.3611
103 R A 0.0000
104 E A 0.0000
105 G A 0.0000
106 S A 0.9311
107 M A 0.0000
108 F A 0.7986
109 V A 1.3887
110 A A 0.0000
111 L A 0.4277
112 S A 0.7278
113 A A 0.0000
114 S A 0.0000
115 V A 0.0000
116 F A 0.5301
117 S A 0.0000
118 L A 0.0000
119 L A 0.5622
120 A A 0.0000
121 I A 0.0000
122 A A 0.0000
123 I A 0.4457
124 E A 0.1149
125 R A 0.1705
126 Y A 0.4024
127 I A 0.6967
128 T A -0.0956
129 M A 0.4901
130 L A 0.6174
131 K A -0.6303
132 M A 0.1195
133 K A -1.2608
134 L A 0.0678
135 H A -1.1251
136 N A -2.0424
137 G A -1.9773
138 S A -1.9878
139 N A -1.6303
140 N A -0.4895
141 F A 1.4805
142 R A 0.2241
143 L A 0.0000
144 F A 2.2563
145 L A 1.6795
146 L A 0.0000
147 I A 0.0000
148 S A 1.0551
149 A A 1.3481
150 C A 0.0000
151 W A 1.7943
152 V A 2.6590
153 I A 2.6323
154 S A 0.0000
155 L A 3.2044
156 I A 3.1317
157 L A 0.0000
158 G A 0.0000
159 G A 1.7538
160 L A 1.3716
161 P A 0.0000
162 I A 1.2813
163 M A 1.3160
164 G A 0.7262
165 W A 0.4232
166 N A 0.1280
167 C A 0.0000
168 I A -0.1031
169 S A -0.2036
170 A A 0.1087
171 L A 0.3240
172 S A -0.0300
173 S A -0.4404
174 C A 0.0000
175 S A 0.0000
176 T A 0.0000
177 V A 0.1790
178 L A 0.2363
179 P A 0.0000
180 L A 0.0000
181 Y A 0.0000
182 H A -0.3125
183 K A -0.3540
184 H A -0.5365
185 Y A 0.0000
186 I A 0.0000
187 L A 1.0829
188 F A 1.0756
189 C A 0.9892
190 T A 0.0000
191 T A 1.2004
192 V A 1.3900
193 F A 1.3542
194 T A 1.4733
195 L A 2.2079
196 L A 0.0000
197 L A 2.0778
198 L A 2.7305
199 S A 2.0336
200 I A 0.0000
201 V A 2.2102
202 I A 2.2640
203 L A 1.2775
204 Y A 0.0000
205 C A 1.0556
206 R A -0.1735
207 I A 0.0000
208 Y A 0.2994
209 S A -0.5961
210 L A -0.3960
211 V A -0.9555
212 R A -2.1150
213 T A -1.6529
214 R A -1.7248
215 S A -1.8001
216 R A -1.8821
217 R A -2.1165
218 L A 0.3591
219 T A 0.2659
220 F A 0.8830
221 R A -1.4098
222 K A -0.8593
223 L A 1.6050
224 L A 2.6542
225 L A 3.2368
226 S A 3.0659
227 I A 4.0333
228 V A 3.8669
229 I A 3.8839
230 L A 2.2355
231 S A 0.0332
232 E A -1.0091
233 K A -1.8237
234 S A 0.0000
235 L A 0.2751
236 A A -0.2421
237 L A 0.1504
238 L A 0.5768
239 K A -0.1382
240 T A 0.5773
241 V A 1.2975
242 I A 1.7780
243 I A 1.2355
244 V A 1.1407
245 L A 0.0000
246 S A 1.1027
247 V A 1.0880
248 F A 0.0000
249 I A 1.1466
250 A A 0.6712
251 C A 0.8529
252 W A 0.0000
253 A A 0.9589
254 P A 1.2149
255 L A 0.0000
256 F A 1.5580
257 I A 2.1468
258 L A 0.0000
259 L A 1.5843
260 L A 1.7976
261 L A 1.5630
262 D A 0.0000
263 V A 0.5015
264 G A 0.1144
265 C A -0.4335
266 K A -1.6398
267 V A -1.0324
268 K A -1.8706
269 T A -1.3972
270 C A -0.9296
271 D A -1.7696
272 I A -0.4447
273 L A 0.0000
274 F A -0.6145
275 R A -1.3421
276 A A -0.2510
277 E A -0.4078
278 Y A 0.8347
279 F A 1.1124
280 L A 0.6797
281 V A 0.0000
282 L A 1.2312
283 A A 0.0000
284 V A 0.0000
285 L A 0.8737
286 N A 0.0000
287 S A 0.0000
288 G A 0.8898
289 T A 0.4830
290 N A 0.0000
291 P A 0.0000
292 I A 1.3366
293 I A 1.0710
294 Y A 0.0000
295 T A 0.0000
296 L A -0.0486
297 T A -0.7147
298 N A -2.1617
299 K A -3.2354
300 E A -2.8802
301 M A 0.0000
302 R A -2.4877
303 R A -2.3723
304 A A -1.1660
305 F A 0.6696
306 I A 1.5157
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018