Project name: OGtop

Status: done

Started: 2024-06-11 13:51:24
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Chain sequence(s) B: FGKRPTDLALSVILVFMLGGGGGGGRLKNIGGGGGYDGDLKDKVPYKGIVISLVLVGGGGGGGNVQLCSTILNVAFPPEVIGPLFFFPLLYM
input PDB
Selected Chain(s) B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with B chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:37)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:38)
Show buried residues

Minimal score value
-3.1125
Maximal score value
4.5667
Average score
0.4585
Total score value
42.1814

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 F B 0.5212
2 G B -0.9258
3 K B -2.3164
4 R B -2.4971
5 P B -1.1444
6 T B -0.6113
7 D B -0.6724
8 L B 0.7615
9 A B 1.4040
10 L B 2.3119
11 S B 2.4514
12 V B 3.3763
13 I B 4.2584
14 L B 4.1908
15 V B 4.5667
16 F B 4.5026
17 M B 3.4512
18 L B 3.1386
19 G B 1.5062
20 G B 0.3310
21 G B 0.0554
22 G B -0.5988
23 G B -1.0170
24 G B -1.1466
25 G B -1.5112
26 R B -1.9957
27 L B -0.7200
28 K B -2.0308
29 N B -1.9959
30 I B -0.4288
31 G B -1.0712
32 G B -1.3388
33 G B -1.2266
34 G B -1.1541
35 G B -1.4533
36 Y B -0.9340
37 D B -2.0078
38 G B -1.8926
39 D B -3.0095
40 L B -1.9436
41 K B -3.1125
42 D B -2.7209
43 K B -1.3883
44 V B -0.1405
45 P B 0.1047
46 Y B 0.9251
47 K B 0.0904
48 G B 1.0799
49 I B 2.6335
50 V B 3.6955
51 I B 3.4227
52 S B 3.1120
53 L B 3.9288
54 V B 4.3024
55 L B 3.8247
56 V B 2.9606
57 G B 1.3465
58 G B -0.1280
59 G B -0.3561
60 G B -0.9660
61 G B -1.2976
62 G B -1.4291
63 G B -1.2603
64 N B -1.4437
65 V B 0.1390
66 Q B -0.8527
67 L B -0.0614
68 C B 0.4422
69 S B 0.6223
70 T B 0.3833
71 I B 0.4802
72 L B 1.1037
73 N B 0.7163
74 V B 1.3763
75 A B 0.2462
76 F B 0.7529
77 P B -0.0568
78 P B -0.4935
79 E B -1.1591
80 V B 0.7849
81 I B 0.0000
82 G B -0.2318
83 P B 0.1394
84 L B 0.0000
85 F B 1.6141
86 F B 2.6599
87 F B 2.7712
88 P B 0.0000
89 L B 3.2652
90 L B 3.6833
91 Y B 3.1319
92 M B 2.3571
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Laboratory of Theory of Biopolymers 2018