Project name: f18177a43310b13

Status: done

Started: 2024-06-17 12:19:25
Settings
Chain sequence(s) A: SKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFTTTVQCFSRYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGI
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:43)
[INFO]       Main:     Simulation completed successfully.                                          (00:05:45)
Show buried residues

Minimal score value
-3.9904
Maximal score value
1.2396
Average score
-0.9342
Total score value
-210.204

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
2 S A -1.7480
3 K A -1.9266
4 G A 0.0000
5 E A -2.6551
6 E A -2.5822
7 L A -1.1964
8 F A 0.0000
9 T A -0.6278
10 G A 0.4512
11 V A 1.2396
12 V A 0.0000
13 P A -0.9752
14 I A 0.0000
15 L A -0.9862
16 V A 0.0000
17 E A -1.9305
18 L A 0.0000
19 D A -3.3361
20 G A 0.0000
21 D A -2.4363
22 V A 0.0000
23 N A -2.0751
24 G A -1.6314
25 H A -2.1611
26 K A -2.8459
27 F A 0.0000
28 S A -1.6658
29 V A 0.0000
30 S A -0.9663
31 G A 0.0000
32 E A -2.1402
33 G A -1.4854
34 E A -1.5504
35 G A 0.0000
36 D A 0.0545
37 A A 0.0000
38 T A 0.2714
39 Y A 0.9402
40 G A 0.0000
41 K A -0.3884
42 L A 0.0000
43 T A -0.7581
44 L A 0.0000
45 K A -0.9364
46 F A 0.0000
47 I A -1.0400
48 C A 0.0000
49 T A -0.7814
50 T A -1.2946
51 G A -1.6006
52 K A -2.2497
53 L A 0.0000
54 P A -1.1990
55 V A 0.0000
56 P A 0.0000
57 W A 0.0000
58 P A 0.0000
59 T A 0.0000
60 L A 0.0000
61 V A 0.0000
62 T A -0.0037
63 T A 0.0000
64 F A 0.0000
68 V A -0.0527
69 Q A -0.2169
70 C A 0.0000
71 F A 0.0000
72 S A 0.0000
73 R A -1.1774
74 Y A 0.0000
75 P A -1.8004
76 D A -3.0657
77 H A -2.2846
78 M A 0.0000
79 K A -3.3140
80 R A -3.0544
81 H A -1.7645
82 D A 0.0000
83 F A 0.0000
84 F A 0.0000
85 K A -1.1575
86 S A 0.0000
87 A A 0.0000
88 M A 0.0000
89 P A -1.8367
90 E A -2.5061
91 G A 0.0000
92 Y A 0.0000
93 V A -0.9173
94 Q A 0.0000
95 E A -2.5636
96 R A 0.0000
97 T A -0.5103
98 I A 0.0000
99 F A 0.3706
100 F A 0.0000
101 K A -1.5851
102 D A -2.5554
103 D A -2.4961
104 G A 0.0000
105 N A -0.7386
106 Y A 0.0000
107 K A -1.8764
108 T A 0.0000
109 R A -3.1202
110 A A 0.0000
111 E A -2.2195
112 V A 0.0000
113 K A -1.9659
114 F A -2.0041
115 E A -2.7630
116 G A -2.2840
117 D A -2.5449
118 T A -1.7283
119 L A 0.0000
120 V A 0.0000
121 N A 0.0000
122 R A -2.8747
123 I A 0.0000
124 E A -3.9529
125 L A 0.0000
126 K A -2.7094
127 G A 0.0000
128 I A -1.1789
129 D A -2.3003
130 F A 0.0000
131 K A -3.9622
132 E A -3.9904
133 D A -3.6067
134 G A -2.8039
135 N A -2.1472
136 I A 0.0000
137 L A -1.9260
138 G A -2.2856
139 H A -2.2238
140 K A -2.5262
141 L A 0.0000
142 E A -1.8498
143 Y A -0.6819
144 N A -0.6203
145 Y A -0.7041
146 N A -0.9709
147 S A -1.0619
148 H A 0.0000
149 N A -1.0828
150 V A 0.0000
151 Y A 0.0634
152 I A 0.0000
153 M A -0.9507
154 A A -1.7151
155 D A 0.0000
156 K A -3.1149
157 Q A -3.1357
158 K A -3.4573
159 N A -2.6641
160 G A 0.0000
161 I A 0.0000
162 K A -1.5315
163 V A 0.0000
164 N A -0.3613
165 F A 0.0000
166 K A -1.1632
167 I A 0.0000
168 R A -0.8515
169 H A 0.0000
170 N A -1.1601
171 I A 0.0000
172 E A -3.2753
173 D A -2.9818
174 G A -1.8027
175 S A -0.7058
176 V A 0.4094
177 Q A 0.0000
178 L A -0.4014
179 A A 0.0000
180 D A 0.0000
181 H A 0.0000
182 Y A 0.1868
183 Q A 0.0000
184 Q A -1.7438
185 N A 0.0000
186 T A -0.9755
187 P A -0.8470
188 I A -0.4057
189 G A -1.3325
190 D A -2.0301
191 G A -1.3720
192 P A -0.8415
193 V A -0.5890
194 L A -0.6668
195 L A -0.7930
196 P A 0.0000
197 D A -2.2076
198 N A -1.6201
199 H A 0.0000
200 Y A 0.1242
201 L A 0.0000
202 S A -0.6276
203 T A -0.8347
204 Q A -1.3131
205 S A -0.5628
206 A A -0.0198
207 L A -0.0167
208 S A -0.6496
209 K A -1.7214
210 D A -2.1751
211 P A -1.8352
212 N A -2.4809
213 E A -2.7245
214 K A -3.1977
215 R A -3.4038
216 D A -2.3139
217 H A 0.0000
218 M A 0.0000
219 V A -0.1304
220 L A 0.0000
221 L A 0.2860
222 E A -0.2495
223 F A -0.0424
224 V A 0.0000
225 T A -0.4465
226 A A 0.0000
227 A A 0.0830
228 G A 0.3013
229 I A 1.1944
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Laboratory of Theory of Biopolymers 2018