Project name: query_structure

Status: done

Started: 2026-03-17 00:46:46
Settings
Chain sequence(s) A: QVQLVESGGGLVQAGGSLRLSCAASGFPVYATWMRWYRQAPGKEREWVAAIESMGQETWYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDYGDWFNYYDYWGQGTQVTVS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:52)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:53)
Show buried residues

Minimal score value
-3.6987
Maximal score value
2.0132
Average score
-0.6861
Total score value
-82.3351

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.4986
2 V A -0.9965
3 Q A -0.9884
4 L A 0.0000
5 V A 0.7781
6 E A 0.0000
7 S A -0.6564
8 G A -1.0306
9 G A -0.8211
10 G A -0.0315
11 L A 1.0118
12 V A -0.0073
13 Q A -1.2334
14 A A -1.4043
15 G A -1.3117
16 G A -0.8473
17 S A -1.1708
18 L A -0.8996
19 R A -2.1334
20 L A 0.0000
21 S A -0.4384
22 C A 0.0000
23 A A -0.1966
24 A A 0.0000
25 S A -0.6962
26 G A -1.0301
27 F A -0.3808
28 P A -0.3878
29 V A 0.0000
30 Y A 0.6156
31 A A 0.5137
32 T A 0.0000
33 W A 0.1184
34 M A 0.0000
35 R A -0.1012
36 W A 0.0000
37 Y A -0.7841
38 R A -1.5598
39 Q A -2.2563
40 A A -2.1311
41 P A -1.4030
42 G A -1.9253
43 K A -3.4538
44 E A -3.6987
45 R A -3.0201
46 E A -2.8111
47 W A -1.1894
48 V A 0.0000
49 A A 0.0000
50 A A 0.0000
51 I A 0.0000
52 E A -0.6264
53 S A 0.1442
54 M A 0.3515
55 G A -0.8676
56 Q A -1.7088
57 E A -1.7802
58 T A -0.8312
59 W A -0.3390
60 Y A -0.7234
61 A A -1.4318
62 D A -2.4196
63 S A -1.8099
64 V A 0.0000
65 K A -2.5932
66 G A -1.7863
67 R A -1.4817
68 F A 0.0000
69 T A -0.8179
70 I A 0.0000
71 S A -0.8591
72 R A -0.9915
73 D A -1.7529
74 N A -1.9358
75 A A -1.6255
76 K A -2.4662
77 N A -1.6648
78 T A 0.0000
79 V A 0.0000
80 Y A -0.6798
81 L A 0.0000
82 Q A -1.2545
83 M A 0.0000
84 N A -1.3553
85 S A -1.1792
86 L A 0.0000
87 K A -2.3155
88 P A -1.9165
89 E A -2.3536
90 D A 0.0000
91 T A -0.9736
92 A A 0.0000
93 V A -0.6145
94 Y A 0.0000
95 Y A -0.3636
96 C A 0.0000
97 N A 0.0000
98 V A 0.0000
99 K A -0.1654
100 D A -0.1578
101 Y A 0.7762
102 G A -0.0967
103 D A -0.9309
104 W A 1.1391
105 F A 2.0132
106 N A 0.3480
107 Y A 1.2693
108 Y A 0.9342
109 D A -0.8361
110 Y A -0.2589
111 W A 0.0133
112 G A -0.0880
113 Q A -1.0110
114 G A -0.5470
115 T A 0.0000
116 Q A -1.1892
117 V A 0.0000
118 T A -0.3110
119 V A 0.0000
120 S A -0.7561
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Laboratory of Theory of Biopolymers 2018