| Chain sequence(s) |
A: QVQLVESGGGLVQAGGSLRLSCAASGFPVYATWMRWYRQAPGKEREWVAAIESMGQETWYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDYGDWFNYYDYWGQGTQVTVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:02)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:02)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:02)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:02)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:02)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:52)
[INFO] Main: Simulation completed successfully. (00:02:53)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.4986 | |
| 2 | V | A | -0.9965 | |
| 3 | Q | A | -0.9884 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.7781 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.6564 | |
| 8 | G | A | -1.0306 | |
| 9 | G | A | -0.8211 | |
| 10 | G | A | -0.0315 | |
| 11 | L | A | 1.0118 | |
| 12 | V | A | -0.0073 | |
| 13 | Q | A | -1.2334 | |
| 14 | A | A | -1.4043 | |
| 15 | G | A | -1.3117 | |
| 16 | G | A | -0.8473 | |
| 17 | S | A | -1.1708 | |
| 18 | L | A | -0.8996 | |
| 19 | R | A | -2.1334 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.4384 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.1966 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.6962 | |
| 26 | G | A | -1.0301 | |
| 27 | F | A | -0.3808 | |
| 28 | P | A | -0.3878 | |
| 29 | V | A | 0.0000 | |
| 30 | Y | A | 0.6156 | |
| 31 | A | A | 0.5137 | |
| 32 | T | A | 0.0000 | |
| 33 | W | A | 0.1184 | |
| 34 | M | A | 0.0000 | |
| 35 | R | A | -0.1012 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.7841 | |
| 38 | R | A | -1.5598 | |
| 39 | Q | A | -2.2563 | |
| 40 | A | A | -2.1311 | |
| 41 | P | A | -1.4030 | |
| 42 | G | A | -1.9253 | |
| 43 | K | A | -3.4538 | |
| 44 | E | A | -3.6987 | |
| 45 | R | A | -3.0201 | |
| 46 | E | A | -2.8111 | |
| 47 | W | A | -1.1894 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | E | A | -0.6264 | |
| 53 | S | A | 0.1442 | |
| 54 | M | A | 0.3515 | |
| 55 | G | A | -0.8676 | |
| 56 | Q | A | -1.7088 | |
| 57 | E | A | -1.7802 | |
| 58 | T | A | -0.8312 | |
| 59 | W | A | -0.3390 | |
| 60 | Y | A | -0.7234 | |
| 61 | A | A | -1.4318 | |
| 62 | D | A | -2.4196 | |
| 63 | S | A | -1.8099 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.5932 | |
| 66 | G | A | -1.7863 | |
| 67 | R | A | -1.4817 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.8179 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.8591 | |
| 72 | R | A | -0.9915 | |
| 73 | D | A | -1.7529 | |
| 74 | N | A | -1.9358 | |
| 75 | A | A | -1.6255 | |
| 76 | K | A | -2.4662 | |
| 77 | N | A | -1.6648 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | -0.6798 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.2545 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.3553 | |
| 85 | S | A | -1.1792 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.3155 | |
| 88 | P | A | -1.9165 | |
| 89 | E | A | -2.3536 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.9736 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.6145 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.3636 | |
| 96 | C | A | 0.0000 | |
| 97 | N | A | 0.0000 | |
| 98 | V | A | 0.0000 | |
| 99 | K | A | -0.1654 | |
| 100 | D | A | -0.1578 | |
| 101 | Y | A | 0.7762 | |
| 102 | G | A | -0.0967 | |
| 103 | D | A | -0.9309 | |
| 104 | W | A | 1.1391 | |
| 105 | F | A | 2.0132 | |
| 106 | N | A | 0.3480 | |
| 107 | Y | A | 1.2693 | |
| 108 | Y | A | 0.9342 | |
| 109 | D | A | -0.8361 | |
| 110 | Y | A | -0.2589 | |
| 111 | W | A | 0.0133 | |
| 112 | G | A | -0.0880 | |
| 113 | Q | A | -1.0110 | |
| 114 | G | A | -0.5470 | |
| 115 | T | A | 0.0000 | |
| 116 | Q | A | -1.1892 | |
| 117 | V | A | 0.0000 | |
| 118 | T | A | -0.3110 | |
| 119 | V | A | 0.0000 | |
| 120 | S | A | -0.7561 |