Project name: Acidic peptide_4

Status: done

Started: 2026-06-25 06:58:18
Settings
Chain sequence(s) A: EDEDEDEDEDED
C: EDEDEDEDEDED
B: EDEDEDEDEDED
D: EDEDEDEDEDED
input PDB
Selected Chain(s) A,C,B,D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:43)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:44)
Show buried residues

Minimal score value
-6.8998
Maximal score value
-2.8348
Average score
-4.9035
Total score value
-235.3698

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E A -3.6065
2 D A -4.4433
3 E A -4.6839
4 D A -4.9604
5 E A -4.8239
6 D A -5.4575
7 E A -5.4983
8 D A -6.1034
9 E A -6.2576
10 D A -6.8998
11 E A -6.4835
12 D A -6.0373
1 E B -3.6679
2 D B -5.0654
3 E B -4.8406
4 D B -5.0018
5 E B -4.8416
6 D B -5.5214
7 E B -5.6192
8 D B -6.0968
9 E B -6.3590
10 D B -6.6688
11 E B -6.4310
12 D B -6.3183
1 E C -5.0566
2 D C -4.9649
3 E C -4.7750
4 D C -4.8853
5 E C -4.5444
6 D C -4.7501
7 E C -4.5912
8 D C -4.7816
9 E C -4.7939
10 D C -4.6209
11 E C -4.1228
12 D C -3.2390
1 E D -4.3300
2 D D -4.4964
3 E D -4.1710
4 D D -4.1520
5 E D -4.2015
6 D D -4.1859
7 E D -4.1571
8 D D -4.1277
9 E D -4.0915
10 D D -4.0848
11 E D -3.7242
12 D D -2.8348
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Laboratory of Theory of Biopolymers 2018