Project name: f260ad5ecd14d1e

Status: done

Started: 2024-12-19 06:32:21
Settings
Chain sequence(s) K: QSVLTQSPSASGTPGQRVTISCSGSRSNIGSNFVYWFHQLPGTAPKLLIHSNDQRPSGVPDRFSGSNSGTSASLAISGLRSEDEADYYCAAWDDSLSSWVFGGGTKLTVL
L: ITLKESGLTLVRPTQTLTLTCTFSGFSLINSGVGVGWIRQPPGKALEWLALIYWDDDKRYNPSLRSRLTISKATSKNQVVLTMTNMDPVDTATYYCTHRGPGHNTPIYFEFWGQGALVTVSS
input PDB
Selected Chain(s) L,K
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:02)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:04)
Show buried residues

Minimal score value
-3.3422
Maximal score value
1.9184
Average score
-0.6098
Total score value
-141.4729

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
2 I L 1.9184
3 T L 0.5431
4 L L 0.0000
5 K L -1.6212
6 E L -1.0555
7 S L -0.4569
8 G L 0.3301
9 L L 1.8558
11 T L 1.7074
12 L L 1.7453
13 V L -0.1139
14 R L -2.2083
15 P L -1.7639
16 T L -1.7210
17 Q L -1.9156
18 T L -1.2871
19 L L 0.0000
20 T L 0.1739
21 L L 0.0000
22 T L -0.2422
23 C L 0.0000
24 T L -0.9990
25 F L 0.0000
26 S L -0.0953
27 G L 0.3833
28 F L 0.3117
29 S L 0.0446
30 L L 0.0000
31 I L 1.0478
34 N L -0.5133
35 S L -0.6095
36 G L -0.4417
37 V L 0.0000
38 G L 0.0000
39 V L 0.0000
40 G L 0.0000
41 W L 0.0000
42 I L 0.0000
43 R L -0.4541
44 Q L 0.0000
45 P L -0.5320
46 P L -0.6947
47 G L -1.4619
48 K L -2.1881
49 A L -1.2881
50 L L 0.0000
51 E L -0.7566
52 W L 0.0000
53 L L 0.0000
54 A L 0.0000
55 L L 0.0000
56 I L 0.0000
57 Y L -1.4053
58 W L -0.9967
59 D L -2.4995
63 D L -2.8244
64 D L -3.3422
65 K L -2.6796
66 R L -2.3430
67 Y L -1.4194
68 N L 0.0000
69 P L -1.0079
70 S L -0.7845
71 L L -1.0483
72 R L -2.2635
74 S L -1.3688
75 R L -1.4974
76 L L 0.0000
77 T L -0.6800
78 I L 0.0000
79 S L -0.5658
80 K L -1.0454
81 A L -1.0133
82 T L -0.8570
83 S L -1.3767
84 K L -2.2904
85 N L -1.8215
86 Q L -1.4261
87 V L 0.0000
88 V L 0.0513
89 L L 0.0000
90 T L -0.0792
91 M L 0.0000
92 T L -1.2228
93 N L -2.2194
94 M L 0.0000
95 D L -1.5989
96 P L -0.3220
97 V L 1.1945
98 D L 0.0000
99 T L 0.6347
100 A L 0.0000
101 T L 0.2844
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 T L 0.0000
106 H L 0.0000
107 R L 0.0000
108 G L 0.0000
109 P L -0.8873
110 G L -1.3425
111 H L -1.9059
111A N L -2.0049
112A T L -1.1907
112 P L -0.7193
113 I L 0.0000
114 Y L 0.0028
115 F L 0.0000
116 E L -0.5140
117 F L 0.5238
118 W L -0.1380
119 G L 0.0000
120 Q L -1.3586
121 G L -0.6538
122 A L 0.2208
123 L L 1.5380
124 V L 0.0000
125 T L 0.7890
126 V L 0.0000
127 S L -0.6906
128 S L -0.6735
1 Q K -1.1219
2 S K -0.1254
3 V K 1.3232
4 L K 0.0000
5 T K 0.0756
6 Q K 0.0000
7 S K -0.7221
8 P K -1.0831
9 S K -1.0951
11 A K -0.8176
12 S K -0.3501
13 G K -0.7639
14 T K -0.5769
15 P K -1.2698
16 G K -1.9205
17 Q K -2.5295
18 R K -2.6988
19 V K -1.1027
20 T K -0.4375
21 I K 0.0000
22 S K -0.4655
23 C K 0.0000
24 S K -0.4583
25 G K -0.6844
26 S K -1.3935
27 R K -2.4286
28 S K -1.7984
29 N K 0.0000
30 I K 0.0000
35 G K -1.3324
36 S K -0.8613
37 N K -0.0864
38 F K 1.0354
39 V K 0.0000
40 Y K 0.0000
41 W K 0.0000
42 F K 0.0000
43 H K 0.0000
44 Q K 0.0000
45 L K -0.5763
46 P K -0.5772
47 G K -0.6176
48 T K -0.6399
49 A K -0.6301
50 P K 0.0000
51 K K -1.3706
52 L K 0.0000
53 L K 0.0000
54 I K 0.0000
55 H K 0.0000
56 S K -0.8265
57 N K -1.4245
65 D K -2.6059
66 Q K -2.5865
67 R K -1.8482
68 P K -1.0791
69 S K -0.7126
70 G K -0.7758
71 V K -0.8528
72 P K -1.2927
74 D K -2.1560
75 R K -1.5399
76 F K 0.0000
77 S K -1.2675
78 G K -1.3818
79 S K -1.4063
80 N K -1.7270
83 S K -1.2119
84 G K -1.3746
85 T K -1.3964
86 S K -1.1063
87 A K 0.0000
88 S K -0.6397
89 L K 0.0000
90 A K -0.5146
91 I K 0.0000
92 S K -1.9277
93 G K -2.0110
94 L K 0.0000
95 R K -2.8518
96 S K -1.9869
97 E K -2.7339
98 D K 0.0000
99 E K -2.5149
100 A K 0.0000
101 D K -1.4317
102 Y K 0.0000
103 Y K 0.0000
104 C K 0.0000
105 A K 0.0000
106 A K 0.0000
107 W K 0.0788
108 D K 0.0000
109 D K -1.7827
110 S K -1.1909
113 L K -0.3034
114 S K -0.7054
115 S K 0.0000
116 W K 0.0671
117 V K 0.7283
118 F K 0.5128
119 G K 0.0000
120 G K -0.6473
121 G K -1.1627
122 T K 0.0000
123 K K -2.2715
124 L K 0.0000
125 T K -1.0912
126 V K -0.4275
127 L K 1.2057
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Laboratory of Theory of Biopolymers 2018