Project name: TB5 [mutate: IE122A, LD126A]

Status: done

Started: 2024-07-23 10:57:38
Settings
Chain sequence(s) A: GHHHHHHGGPEVRAERYIPAPPERVYKLAKDLEGLKPYLKEVESLEVVAREGARTRSRWVAVAMGKKVRWLEEEEWDDENLRNRFFSPEGDFDRYEGTWVFLPEGEGTRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLESYVLAHSDAYN
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues IE122A,LD126A
Energy difference between WT (input) and mutated protein (by FoldX) -1.91605 kcal/mol
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:01:15)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:01:20)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:34)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:35)
Show buried residues

Minimal score value
-2.2801
Maximal score value
1.0782
Average score
-0.5424
Total score value
-85.6988

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.6489
2 H A -1.2610
3 H A -1.3592
4 H A -1.3576
5 H A -1.3589
6 H A -1.3961
7 H A -1.2406
8 G A -0.6809
9 G A -0.1534
10 P A -0.4474
11 E A -1.8398
12 V A 0.0000
13 R A -1.6200
14 A A 0.0000
15 E A -0.9586
16 R A -0.6116
17 Y A 0.7421
18 I A 0.0000
19 P A -0.2091
20 A A 0.0000
21 P A -0.1761
22 P A 0.0000
23 E A -1.8713
24 R A -0.7889
25 V A 0.0000
26 Y A 0.0000
27 K A -1.7289
28 L A 0.0000
29 A A 0.0000
30 K A -0.4913
31 D A -0.8062
32 L A 0.0000
33 E A -1.8382
34 G A -0.4290
35 L A 0.0000
36 K A -0.3322
37 P A -0.2463
38 Y A 0.2852
39 L A 0.0000
40 K A -1.8609
41 E A -1.1952
42 V A 0.0000
43 E A -1.8508
44 S A -0.4985
45 L A 0.0000
46 E A -1.7607
47 V A 0.0782
48 V A 0.5527
49 A A -0.1700
50 R A -1.8246
51 E A -2.1754
52 G A -0.7884
53 A A -0.3692
54 R A -2.0492
55 T A 0.0000
56 R A -0.8958
57 S A 0.0000
58 R A -1.8441
59 W A 0.0000
60 V A 0.0894
61 A A 0.0000
62 V A 0.3510
63 A A 0.2970
64 M A 0.9711
65 G A -0.5591
66 K A -1.9755
67 K A -1.9219
68 V A 0.0000
69 R A -1.8028
70 W A 0.0000
71 L A 0.0000
72 E A 0.0000
73 E A -0.6579
74 E A 0.0000
75 E A -1.9785
76 W A 0.0000
77 D A -1.0916
78 D A -2.2522
79 E A -2.2801
80 N A -1.0853
81 L A -0.0920
82 R A -0.6644
83 N A 0.0000
84 R A -1.8454
85 F A 0.0000
86 F A 0.9322
87 S A 0.1406
88 P A -0.4748
89 E A -1.9309
90 G A -0.8883
91 D A -0.5773
92 F A 0.0000
93 D A -1.8813
94 R A -0.9632
95 Y A 0.0000
96 E A -0.4568
97 G A -0.1974
98 T A -0.2535
99 W A 0.1502
100 V A 0.1158
101 F A 0.0000
102 L A 0.5569
103 P A -0.2823
104 E A -0.8846
105 G A -0.9283
106 E A -1.9034
107 G A 0.0000
108 T A 0.0000
109 R A -0.7605
110 V A 0.0000
111 V A 0.0000
112 L A 0.0000
113 T A -0.2223
114 L A 0.0000
115 T A -0.2654
116 Y A 0.0000
117 E A -1.1360
118 L A 0.0272
119 T A 0.0483
120 I A 0.3549
121 P A -0.5049
122 E A -1.6779 mutated: IE122A
123 F A 0.6631
124 G A -0.1814
125 G A -0.8375
126 D A -1.8201 mutated: LD126A
127 L A -0.2987
128 R A -2.0976
129 K A -1.9234
130 L A 0.3130
131 V A 0.0000
132 Q A -0.6866
133 K A -1.4327
134 L A 0.0106
135 M A 0.0000
136 Q A -0.5229
137 E A -1.6827
138 N A -0.5245
139 V A 0.0000
140 E A -0.8770
141 S A -0.2881
142 L A 0.1545
143 L A 0.0000
144 K A -1.0854
145 G A 0.0000
146 L A 0.0000
147 E A -0.5209
148 S A -0.1360
149 Y A 0.0000
150 V A 0.0000
151 L A 0.8345
152 A A 0.0947
153 H A -0.6396
154 S A -0.6026
155 D A -1.8069
156 A A -0.0289
157 Y A 1.0782
158 N A -1.0166
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Laboratory of Theory of Biopolymers 2018