Project name: af3_design11

Status: done

Started: 2025-07-24 20:06:34
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Chain sequence(s) A: QVQLVESGGGLVQPGGSLRLSCAASGSASGIRSWGWFRQAPGQGLEAVAVISDTRPPEVSPRYDPSRFTISRDNSKNTLYLQMNSLRAEDTAVYYCASVPGLEAEANEPFRESWGQGTLVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:07)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:07)
Show buried residues

Minimal score value
-2.8598
Maximal score value
1.7643
Average score
-0.8427
Total score value
-104.4981

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.8046
2 V A -1.6320
3 Q A -1.3155
4 L A 0.0000
5 V A 0.5834
6 E A 0.0000
7 S A -0.2950
8 G A -0.7794
9 G A 0.1671
10 G A 0.8667
11 L A 1.4234
12 V A -0.0866
13 Q A -1.3848
14 P A -1.6668
15 G A -1.4540
16 G A -0.9562
17 S A -1.2009
18 L A -0.8887
19 R A -2.0891
20 L A 0.0000
21 S A -0.4839
22 C A 0.0000
23 A A -0.3636
24 A A -0.6456
25 S A -1.0374
26 G A -1.2929
27 S A -0.9888
28 A A 0.0000
29 S A -0.9470
30 G A -1.0442
31 I A -1.1988
32 R A -1.6334
33 S A 0.0000
34 W A 0.0000
35 G A 0.0000
36 W A 0.0000
37 F A 0.4229
38 R A 0.0153
39 Q A -0.4840
40 A A -0.9107
41 P A -1.1818
42 G A -1.2359
43 Q A -1.7024
44 G A -0.9218
45 L A 0.2685
46 E A -0.4839
47 A A -0.1067
48 V A 0.0000
49 A A 0.0000
50 V A -0.2921
51 I A 0.0000
52 S A -2.0848
53 D A -2.7628
54 T A -2.1525
55 R A -2.7655
56 P A -1.9401
57 P A -1.7234
58 E A -1.9485
59 V A -1.1352
60 S A -1.1634
61 P A -1.5393
62 R A -2.2240
63 Y A 0.0000
64 D A -1.6479
65 P A -1.3215
66 S A -0.7358
67 R A 0.0000
68 F A 0.0000
69 T A -0.8387
70 I A 0.0000
71 S A -0.7586
72 R A -1.6303
73 D A -2.1897
74 N A -2.5952
75 S A -2.0665
76 K A -2.7543
77 N A -2.2615
78 T A 0.0000
79 L A 0.0000
80 Y A -0.6711
81 L A 0.0000
82 Q A -1.1619
83 M A 0.0000
84 N A -1.3822
85 S A -1.2017
86 L A 0.0000
87 R A -2.6061
88 A A -1.8700
89 E A -2.3614
90 D A 0.0000
91 T A -0.4680
92 A A 0.0000
93 V A 0.9670
94 Y A 0.0000
95 Y A 0.4923
96 C A 0.0000
97 A A 0.0000
98 S A 0.0000
99 V A -0.3238
100 P A -0.8162
101 G A -0.8467
102 L A 0.0079
103 E A -1.9817
104 A A -1.8758
105 E A -2.8598
106 A A -2.0040
107 N A -2.4909
108 E A -2.7361
109 P A -1.7124
110 F A -1.4465
111 R A -2.5925
112 E A -2.2968
113 S A -1.3423
114 W A -0.3449
115 G A -0.1773
116 Q A -0.8824
117 G A 0.0000
118 T A 0.6211
119 L A 1.7643
120 V A 0.0000
121 T A 0.3533
122 V A 0.0000
123 S A -0.7195
124 S A -0.5313
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Laboratory of Theory of Biopolymers 2018