Project name: MeFDH1

Status: done

Started: 2024-06-16 12:25:49
Settings
Chain sequence(s) B: SFAHPGRGRNVARAVPKGRQVDPHAKVEIEELLGTRPRQRDLLIEHLHLIQDTYGQISADHLAALADEMSLAFAEVFETATFYAHFDVVKEGEADIPRLTIRVCDSITCAMFGADELLETLQRELASDAVRVVRAPCVGLCDHAPAVEVGHNFLHRADLASVRAAVEAEDTHAHIPTYVDYDAYRAGGGYATLERLRSGELPVDDVLKVLDDGGLRGLGGAGFPTGRKWRSVRGEPGPRLMAVNGDEGEPGTFKDQLYLNTDPHRFLEGMLIGAHVVEAADVYIYLRDEYPISREILAREIAKLPEGTRIHLRRGAGAYICGEESSLIESLEGKRGLPRHKPPFPFQVGLFNRPTLINNIETLFWVRDLIERGAEWWKSHGRNGRVGLRSYSVSGRVKEPGVKLAPAGLTIQELIDEYCGGISDGHSFAAYLPGGASGGILPASMNDIPLDFGTLEKYGCFIGSAAVVILSDQDDVRGAALNLMKFFEDESCGQCTPCRSGTQKARMLMENGVWDTDLLGELAQCMRDASICGLGQAASNPVSTVIKYFPDLFPEPR
input PDB
Selected Chain(s) B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with B chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:13)
[INFO]       Main:     Simulation completed successfully.                                          (00:05:17)
Show buried residues

Minimal score value
-3.9216
Maximal score value
1.6327
Average score
-0.8571
Total score value
-477.4089

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
10 S B 0.7456
11 F B 1.6327
12 A B 0.3024
13 H B -1.1306
14 P B -1.4413
15 G B -2.3350
16 R B -3.3148
17 G B -2.6352
18 R B -2.9604
19 N B -1.9896
20 V B 0.3143
21 A B -0.1275
22 R B -1.5716
23 A B -0.3112
24 V B -0.2890
25 P B -1.3294
26 K B -2.4124
27 G B -1.7720
28 R B -1.6120
29 Q B -1.6122
30 V B -1.2836
31 D B -1.4204
32 P B -1.0845
33 H B -1.5757
34 A B 0.0000
35 K B -1.9663
36 V B -1.0023
37 E B -2.0615
38 I B 0.0000
39 E B -3.0030
40 E B -2.7895
41 L B -1.5852
42 L B 0.0000
43 G B -1.7215
44 T B -1.3446
45 R B -1.7091
46 P B -1.5088
47 R B -1.7640
48 Q B -2.0614
49 R B -1.8299
50 D B -1.2084
51 L B -1.0150
52 L B 0.0000
53 I B 0.0000
54 E B -0.3076
55 H B 0.0000
56 L B 0.0000
57 H B 0.0000
58 L B -0.3087
59 I B 0.0000
60 Q B -0.8917
61 D B -1.5008
62 T B -0.5703
63 Y B -0.2801
64 G B -1.2360
65 Q B -0.9332
66 I B 0.0000
67 S B -1.3898
68 A B 0.0000
69 D B -2.4302
70 H B -1.2309
71 L B 0.0000
72 A B 0.0000
73 A B 0.0000
74 L B 0.0000
75 A B 0.0000
76 D B -1.9139
77 E B -1.9040
78 M B 0.0000
79 S B -1.1100
80 L B -0.5209
81 A B -0.0194
82 F B 0.2254
83 A B 0.1084
84 E B -0.5596
85 V B 0.0000
86 F B 0.0571
87 E B -1.0138
88 T B 0.0000
89 A B 0.0000
90 T B -0.2008
91 F B -0.1869
92 Y B 0.0000
93 A B -0.1874
94 H B -0.1688
95 F B 0.0000
96 D B -0.5040
97 V B -0.4324
98 V B 0.0000
99 K B -2.7487
100 E B -3.0392
101 G B -2.3065
102 E B -2.4769
103 A B -1.9462
104 D B -2.5366
105 I B -1.4407
106 P B -1.9486
107 R B -2.4162
108 L B 0.0000
109 T B -0.5995
110 I B 0.0000
111 R B -0.8552
112 V B 0.0000
113 C B 0.0000
114 D B -1.6685
115 S B 0.0000
116 I B 0.0000
117 T B 0.0000
118 C B 0.0000
119 A B -0.7559
120 M B -0.3829
121 F B -0.2032
122 G B -1.1369
123 A B 0.0000
124 D B -3.4006
125 E B -3.3754
126 L B 0.0000
127 L B -2.9055
128 E B -3.8882
129 T B -2.9699
130 L B 0.0000
131 Q B -2.9183
132 R B -3.4716
133 E B -3.3212
134 L B -1.9610
135 A B -1.5876
136 S B -1.8541
137 D B -2.4041
138 A B -1.5592
139 V B 0.0000
140 R B -1.0222
141 V B 0.0000
142 V B -1.0171
143 R B -2.2897
144 A B 0.0000
145 P B -1.0314
146 C B 0.0000
147 V B 0.0000
148 G B 0.0000
149 L B 0.0000
150 C B 0.0000
151 D B -1.1644
152 H B -1.3011
153 A B 0.0000
154 P B 0.0000
155 A B 0.0000
156 V B 0.0000
157 E B 0.0000
158 V B 0.0000
159 G B -1.1108
160 H B -1.0263
161 N B 0.0000
162 F B -0.5347
163 L B -0.7820
164 H B -1.8037
165 R B -2.5301
166 A B 0.0000
167 D B -2.1067
168 L B -1.2083
169 A B -0.9458
170 S B -1.4506
171 V B 0.0000
172 R B -2.7520
173 A B -1.9031
174 A B 0.0000
175 V B -2.0938
176 E B -2.8794
177 A B -2.1903
178 E B -3.0338
179 D B -2.4316
180 T B -1.6855
181 H B -1.7570
182 A B -1.0343
183 H B -1.0097
184 I B 0.0784
185 P B 0.0389
186 T B 0.0368
187 Y B 0.2993
188 V B -0.1591
189 D B -1.3553
190 Y B -1.7523
191 D B -2.5713
192 A B -1.4853
193 Y B 0.0000
194 R B -2.6170
195 A B -1.6555
196 G B -1.3457
197 G B -1.1319
198 G B 0.0000
199 Y B 0.0000
200 A B -1.8103
201 T B 0.0000
202 L B 0.0000
203 E B -3.6640
204 R B -3.9216
205 L B 0.0000
206 R B -3.5918
207 S B -2.9188
208 G B -2.7176
209 E B -3.1024
210 L B -2.6132
211 P B -2.2895
212 V B -2.0546
213 D B -2.8014
214 D B -2.5563
215 V B 0.0000
216 L B 0.0000
217 K B -3.1977
218 V B -2.1725
219 L B 0.0000
220 D B -2.4648
221 D B -2.0849
222 G B 0.0000
223 G B -1.3587
224 L B 0.0000
225 R B -1.2792
226 G B -0.4505
227 L B 0.0000
228 G B -0.6771
229 G B -0.2313
230 A B 0.1206
231 G B 0.0000
232 F B 0.2207
233 P B -0.9833
234 T B 0.0000
235 G B 0.0000
236 R B -2.6230
237 K B -1.4585
238 W B 0.0000
239 R B -2.1113
240 S B -1.5115
241 V B 0.0000
242 R B -2.2556
243 G B -1.5628
244 E B -1.5452
245 P B -1.3140
246 G B -1.6652
247 P B -1.3893
248 R B -1.5424
249 L B 0.0000
250 M B 0.0000
251 A B 0.0000
252 V B 0.0000
253 N B -0.5617
254 G B 0.0000
255 D B 0.0000
256 E B 0.0000
257 G B -0.1368
258 E B -0.2830
259 P B 0.0000
260 G B 0.0000
261 T B 0.0000
262 F B 0.0000
263 K B 0.0000
264 D B 0.0000
265 Q B 0.2797
266 L B 0.6857
267 Y B 0.0000
268 L B 0.0000
269 N B 0.1814
270 T B 0.0807
271 D B -0.0527
272 P B 0.0000
273 H B 0.0000
274 R B -0.2887
275 F B 0.0000
276 L B 0.0000
277 E B 0.0000
278 G B 0.0000
279 M B 0.0000
280 L B -0.7342
281 I B 0.0000
282 G B 0.0000
283 A B 0.0000
284 H B -1.3996
285 V B 0.0000
286 V B 0.0000
287 E B -2.2911
288 A B 0.0000
289 A B -1.1689
290 D B -1.2505
291 V B 0.0000
292 Y B 0.0000
293 I B 0.0000
294 Y B 0.0000
295 L B 0.0000
296 R B 0.0000
297 D B -0.3347
298 E B 0.0000
299 Y B 0.0000
300 P B 0.0000
301 I B -0.2364
302 S B 0.0000
303 R B -0.7132
304 E B -1.2845
305 I B 0.0000
306 L B 0.0000
307 A B -1.1389
308 R B -2.1488
309 E B 0.0000
310 I B -0.3939
311 A B -1.0145
312 K B -1.8593
313 L B -1.0000
314 P B -1.3453
315 E B -2.4304
317 G B -1.5140
318 T B -1.7127
319 R B -2.2011
320 I B -0.7276
321 H B -0.5628
322 L B 0.0180
323 R B 0.0000
324 R B -0.3684
325 G B 0.0000
326 A B 0.0000
327 G B -0.1012
328 A B -0.2017
329 Y B -0.2368
330 I B 0.0000
331 C B 0.0000
332 G B -0.7470
333 E B -1.1066
334 E B -1.3564
335 S B 0.0000
336 S B 0.0000
337 L B 0.0000
338 I B 0.0000
339 E B -0.7712
340 S B 0.0000
341 L B 0.0000
342 E B -0.8160
343 G B 0.0000
344 K B -1.3570
345 R B -1.2851
346 G B 0.0000
347 L B -0.3175
348 P B 0.0000
349 R B -1.0468
350 H B -1.3398
351 K B -1.1774
352 P B -0.8406
353 P B -0.2933
354 F B 0.2970
355 P B -0.0467
356 F B 0.0158
357 Q B -0.4794
358 V B -0.2388
359 G B 0.0000
360 L B 0.0000
361 F B -0.4081
362 N B -1.2855
363 R B -1.4821
364 P B 0.0000
365 T B 0.0000
366 L B 0.0000
367 I B 0.0000
368 N B 0.0000
369 N B -0.4115
370 I B 0.0000
371 E B 0.0000
372 T B 0.0000
373 L B 0.0000
374 F B 0.0000
375 W B 0.0000
376 V B 0.0000
377 R B 0.0000
378 D B -1.1611
379 L B 0.0000
380 I B -1.2006
381 E B -1.8266
382 R B -2.5783
383 G B -1.8591
384 A B -2.1930
385 E B -2.4459
386 W B -1.7321
387 W B 0.0000
388 K B -1.5796
389 S B -1.1809
390 H B -0.8300
391 G B -0.9857
392 R B -1.9125
393 N B -2.0533
394 G B -1.4381
395 R B -1.0853
396 V B -0.2093
397 G B 0.0000
398 L B 0.1619
399 R B 0.0000
400 S B 0.0000
401 Y B 0.0000
402 S B 0.0000
403 V B 0.0000
404 S B 0.0000
405 G B 0.0000
406 R B 0.0000
407 V B 0.0000
408 K B -2.6058
409 E B -2.6768
410 P B -1.4727
411 G B -0.4969
412 V B 0.3049
413 K B 0.2322
414 L B 0.9315
415 A B 0.0000
416 P B -0.3096
417 A B 0.0000
418 G B 0.0000
419 L B 0.0000
420 T B 0.0000
421 I B 0.0000
422 Q B -2.2122
423 E B -2.3360
424 L B 0.0000
425 I B 0.0000
426 D B -3.3139
427 E B -2.8728
428 Y B -1.7163
429 C B 0.0000
430 G B -2.1448
431 G B -2.0620
432 I B -1.2945
433 S B -1.7169
434 D B -2.2798
435 G B -1.8032
436 H B -1.6609
437 S B -1.1853
438 F B -0.4320
439 A B -0.8909
440 A B 0.0000
441 Y B 0.0000
442 L B 0.0000
443 P B 0.0000
444 G B 0.0000
445 G B 0.0000
446 A B 0.0000
447 S B -0.1632
448 G B 0.0000
449 G B 0.0000
450 I B 0.0000
451 L B 0.0000
452 P B 0.0538
453 A B -0.3810
454 S B -0.5507
455 M B -0.6974
456 N B -1.5276
457 D B -2.2151
458 I B 0.0000
459 P B -1.3709
460 L B 0.0000
461 D B 0.0000
462 F B -0.2539
463 G B -1.0600
464 T B -1.0244
465 L B 0.0000
466 E B -2.6577
467 K B -2.6004
468 Y B -1.4456
469 G B -1.5079
470 C B 0.0000
471 F B -0.4139
472 I B 0.0000
473 G B 0.0000
474 S B 0.0000
475 A B 0.0000
476 A B 0.0000
477 V B 0.0000
478 V B 0.0000
479 I B 0.0000
480 L B 0.0000
481 S B 0.0000
482 D B -2.8688
483 Q B -2.6635
484 D B -2.2561
485 D B -2.5949
486 V B 0.0000
487 R B -0.9256
488 G B -1.1979
489 A B 0.0000
490 A B 0.0000
491 L B -0.8316
492 N B -0.6720
493 L B 0.0000
494 M B 0.0000
495 K B -1.8267
496 F B 0.0000
497 F B 0.0000
498 E B -2.4739
499 D B -2.6126
500 E B -1.4136
501 S B -1.2504
502 C B -0.6802
503 G B -1.0276
504 Q B -0.5825
505 C B -0.3864
506 T B -0.5471
507 P B -1.1448
508 C B 0.0000
509 R B -2.2250
510 S B -1.5994
511 G B 0.0000
512 T B 0.0000
513 Q B -2.4060
514 K B -1.4720
515 A B 0.0000
516 R B -1.5883
517 M B -0.9068
518 L B -1.0082
519 M B 0.0000
520 E B -2.0196
521 N B -1.6912
522 G B -0.7757
523 V B -0.1722
524 W B 0.0000
525 D B -2.2864
526 T B -1.9423
527 D B -2.6974
528 L B -1.6477
529 L B 0.0000
530 G B -2.0475
531 E B -2.4511
532 L B -1.6030
533 A B -1.7610
534 Q B -2.4586
535 C B -1.6644
536 M B 0.0000
537 R B -2.2394
538 D B -2.4250
539 A B -1.1180
540 S B -0.8719
541 I B -0.3858
542 C B -0.6583
543 G B -0.8286
544 L B 0.0000
545 G B 0.0000
546 Q B -1.8705
547 A B 0.0000
548 A B 0.0000
549 S B 0.0000
550 N B 0.0000
551 P B 0.0000
552 V B 0.0000
553 S B -0.5699
554 T B 0.0000
555 V B 0.0000
556 I B -0.6834
557 K B -1.5838
558 Y B -0.5974
559 F B -0.5971
560 P B -1.0771
561 D B -1.8797
562 L B -0.7260
563 F B -0.8966
564 P B -1.4779
565 E B -2.2272
566 P B -2.0589
567 R B -2.8074
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Laboratory of Theory of Biopolymers 2018